Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GUU87_RS05505 Genome accession   NZ_CP047876
Coordinates   1136157..1136672 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LD22-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131157..1141672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU87_RS05460 (GUU87_05460) csrA 1131609..1131794 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GUU87_RS05490 (GUU87_05490) yqaB 1133387..1133953 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GUU87_RS05495 (GUU87_05495) yqaA 1133950..1134378 (+) 429 WP_001287457.1 YqaA family protein -
  GUU87_RS05500 (GUU87_05500) gshA 1134451..1136007 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  GUU87_RS05505 (GUU87_05505) luxS 1136157..1136672 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GUU87_RS05510 (GUU87_05510) emrB 1136736..1138274 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GUU87_RS05515 (GUU87_05515) emrA 1138291..1139463 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GUU87_RS05520 (GUU87_05520) emrR 1139590..1140120 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GUU87_RS05525 (GUU87_05525) ygaH 1140211..1140546 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GUU87_RS05530 (GUU87_05530) ygaZ 1140536..1141273 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=366195 GUU87_RS05505 WP_001130211.1 1136157..1136672(+) (luxS) [Escherichia coli strain LD22-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=366195 GUU87_RS05505 WP_001130211.1 1136157..1136672(+) (luxS) [Escherichia coli strain LD22-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731