Detailed information NTG0366192

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GUU87_RS05210
• Genome accession: NZ_CP047876
• Coordinates: 1080044..1081036 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LD22-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1075044..1086036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GUU87_RS05180 (GUU87_05180)	ispD	1075105..1075815 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GUU87_RS05185 (GUU87_05185)	ispF	1075815..1076294 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GUU87_RS05190 (GUU87_05190)	truD	1076291..1077340 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GUU87_RS05195 (GUU87_05195)	surE	1077321..1078082 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GUU87_RS05200 (GUU87_05200)	pcm	1078076..1078702 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GUU87_RS05205 (GUU87_05205)	nlpD	1078887..1079981 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GUU87_RS05210 (GUU87_05210)	rpoS	1080044..1081036 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GUU87_RS05215 (GUU87_05215)	-	1081157..1081564 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
GUU87_RS05220 (GUU87_05220)	-	1081711..1082304 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GUU87_RS05225 (GUU87_05225)	-	1082304..1083731 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GUU87_RS05230 (GUU87_05230)	-	1083742..1083978 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GUU87_RS05235 (GUU87_05235)	ygbN	1084017..1085381 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=366192 GUU87_RS05210 WP_000081550.1 1080044..1081036(+) (rpoS) [Escherichia coli strain LD22-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=366192 GUU87_RS05210 WP_000081550.1 1080044..1081036(+) (rpoS) [Escherichia coli strain LD22-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715