Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   SMUNN2025_RS07240 Genome accession   NC_013928
Coordinates   1491221..1493482 (+) Length   753 a.a.
NCBI ID   WP_012997883.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 1486221..1498482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS07215 (SmuNN2025_1406) - 1487375..1487851 (-) 477 WP_002263564.1 ferrous iron transport protein A -
  SMUNN2025_RS07220 (SmuNN2025_1407) - 1488044..1488778 (-) 735 WP_002264702.1 amino acid ABC transporter ATP-binding protein -
  SMUNN2025_RS07225 (SmuNN2025_1408) - 1488778..1489464 (-) 687 WP_002263566.1 amino acid ABC transporter permease -
  SMUNN2025_RS07230 (SmuNN2025_1409) - 1489677..1489907 (-) 231 WP_002263567.1 YkuJ family protein -
  SMUNN2025_RS07235 (SmuNN2025_1410) argF 1489984..1490964 (-) 981 WP_002278061.1 ornithine carbamoyltransferase -
  SMUNN2025_RS07240 (SmuNN2025_1411) clpE 1491221..1493482 (+) 2262 WP_012997883.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SMUNN2025_RS07245 (SmuNN2025_1412) - 1493593..1494048 (+) 456 WP_002263570.1 NUDIX hydrolase -
  SMUNN2025_RS07250 (SmuNN2025_1413) - 1494115..1494417 (+) 303 WP_002263571.1 DUF1827 family protein -
  SMUNN2025_RS07260 (SmuNN2025_1414) ileS 1495186..1497978 (-) 2793 WP_012997884.1 isoleucine--tRNA ligase -

Sequence


Protein


Download         Length: 753 a.a.        Molecular weight: 83751.87 Da        Isoelectric Point: 5.0597

>NTDB_id=36603 SMUNN2025_RS07240 WP_012997883.1 1491221..1493482(+) (clpE) [Streptococcus mutans NN2025]
MLCQNCKLNEATIHLYANVNGQQKQIDLCQNCYQIMKTDPENGPLNHLSQQNSSSINPFFDDFFGDLNNFRAFNNQDLPN
TPPTQAGGGNGNGGNNRRPGGSQQQASQKPNGLLEEFGINLTDIARKGEIDPVIGRDEEITRVIEILNRRTKNNPVLIGE
PGVGKTAVVEGLAQKIVDGDVPQKLHGKNVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRQRQDVILFIDEIHEIVGAGS
AGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVAETITILKGIQPKYEDYHHVKYTDE
AIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDHRLIEAENLKAQATRDEDYEKAAYFRDQIAKYKE
MQSAKLDKENTPVITEKNIEVIVEQKTNIPVGELKEKEQSQLIHLADDLKTRVIGQDAAVDKIAKAIRRNRVGLGTPNRP
IGSFLFVGPTGVGKTELSKQLAIELFGSEDSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLD
EVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEANVGFGASREGRTNSVLGELGNFFSPEFMNR
FDGIIEFQALSKDNLLQIVSLMLDDVNQRLAVNAIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQEHIEDAITDFYLEH
PEQKELKAIMTSNGKIVIRASNKVETVTKATSD

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=36603 SMUNN2025_RS07240 WP_012997883.1 1491221..1493482(+) (clpE) [Streptococcus mutans NN2025]
ATGCTCTGTCAAAATTGTAAATTAAATGAAGCGACTATTCATCTATATGCTAATGTTAATGGTCAGCAAAAGCAGATTGA
CCTTTGTCAAAATTGTTATCAAATTATGAAAACGGATCCTGAAAATGGACCTTTAAATCATCTTTCGCAACAAAATTCGT
CATCCATCAATCCTTTCTTTGATGATTTCTTTGGCGATTTGAATAATTTTCGTGCCTTTAATAATCAAGATCTGCCAAAT
ACACCGCCAACACAAGCTGGTGGCGGCAATGGCAACGGAGGCAATAATCGCCGTCCCGGCGGATCTCAGCAACAGGCCTC
CCAAAAGCCAAATGGCTTGCTTGAAGAGTTTGGTATTAATTTAACAGATATTGCACGCAAGGGTGAAATTGATCCTGTTA
TTGGCCGTGATGAAGAAATCACAAGGGTTATCGAAATTCTCAACCGTCGCACAAAGAATAATCCTGTTCTTATTGGAGAA
CCGGGTGTCGGTAAAACTGCTGTTGTCGAAGGACTGGCGCAAAAAATTGTTGATGGTGATGTTCCACAAAAATTACATGG
AAAAAATGTCATTCGTCTGGACGTCGTCAGCCTTGTTCAAGGTACTGGTATTCGAGGCCAATTTGAAGAACGGATGCAAA
AGCTAATGGAAGAAATCCGTCAACGTCAAGATGTTATTCTTTTCATTGATGAAATTCATGAAATTGTTGGTGCTGGTTCT
GCTGGCGATGGCAATATGGATGCCGGAAATATTTTAAAACCCGCTTTGGCACGCGGTGAGCTTCAACTTGTTGGTGCTAC
AACACTCAATGAATATCGGATTATTGAAAAAGATGCCGCTTTGGAACGTCGAATGCAACCCGTAAAAGTTGATGAACCTA
GTGTTGCAGAAACCATAACGATTCTTAAAGGTATTCAGCCCAAATATGAAGATTACCATCATGTAAAGTATACAGATGAA
GCGATTGAAGCTGCTGCAAATCTTTCAAATCGTTACATTCAGGATCGTTTTTTACCTGATAAGGCTATTGATCTTCTAGA
TGAAGCTGGCTCTAAAATGAATTTAACACTTAACTTTGTAGATCCTAAAGAAATTGATCACCGCTTGATTGAAGCCGAAA
ATCTAAAAGCTCAAGCAACCCGTGATGAAGATTATGAAAAAGCAGCTTACTTCCGTGATCAAATTGCCAAATACAAGGAA
ATGCAATCCGCTAAACTTGATAAGGAGAATACTCCTGTTATTACAGAAAAAAATATTGAAGTAATTGTCGAGCAAAAGAC
CAATATTCCTGTTGGTGAATTAAAAGAAAAGGAACAATCACAATTAATTCATCTCGCTGACGATCTTAAAACGCGTGTTA
TTGGACAGGATGCTGCTGTTGATAAAATTGCTAAAGCTATTCGCCGCAATCGTGTTGGACTAGGCACTCCAAATCGGCCA
ATTGGTTCTTTCCTTTTTGTCGGCCCTACTGGTGTTGGTAAAACGGAACTCTCTAAACAATTAGCTATTGAGCTTTTTGG
TTCTGAAGATAGTATGATTCGTTTCGATATGAGTGAATACATGGAAAAACATGCTGTGGCTAAACTTGTTGGTGCACCTC
CGGGATATGTCGGTTATGAAGAAGCTGGTCAGTTAACCGAAAAAGTTCGTCGCAATCCTTATTCATTGATCTTACTCGAT
GAAGTTGAAAAAGCTCATCCAGATGTCATGCATATGTTCTTACAAGTGCTTGATGATGGTCGTCTAACGGATGGACAAGG
ACGCACTGTCAGCTTTAAGGATACTATTATTATCATGACCTCAAATGCTGGTACAGGGAAATCTGAAGCTAATGTTGGTT
TTGGTGCCAGTCGAGAAGGCCGTACTAATTCTGTTCTAGGCGAATTGGGTAACTTCTTTAGCCCTGAATTTATGAACCGT
TTTGATGGTATCATCGAATTTCAGGCTTTAAGCAAGGATAATCTTCTTCAAATTGTTTCTCTCATGCTGGATGACGTTAA
TCAACGTTTAGCTGTTAATGCTATTCACCTTGATGTAACTGATAAAGTTAAAGAAAAATTGGTTGATCTCGGTTATGATC
CTAAAATGGGAGCAAGACCGCTGCGTCGTACTATCCAAGAACATATTGAAGATGCTATTACGGATTTCTACTTAGAGCAT
CCTGAACAAAAAGAACTAAAAGCTATTATGACAAGCAATGGCAAAATTGTTATCAGGGCTTCTAACAAAGTCGAGACGGT
TACCAAAGCAACTTCAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

99.734

100

0.997

  clpE Streptococcus pneumoniae Rx1

82.62

99.336

0.821

  clpE Streptococcus pneumoniae D39

82.62

99.336

0.821

  clpE Streptococcus pneumoniae R6

82.62

99.336

0.821

  clpE Streptococcus pneumoniae TIGR4

82.62

99.336

0.821

  clpC Lactococcus lactis subsp. cremoris KW2

76.291

100

0.765

  clpC Bacillus subtilis subsp. subtilis str. 168

53.159

86.189

0.458

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48

86.321

0.414

  clpC Streptococcus pneumoniae Rx1

49.355

82.337

0.406

  clpC Streptococcus pneumoniae D39

49.355

82.337

0.406

  clpC Streptococcus pneumoniae TIGR4

49.194

82.337

0.405

  clpC Streptococcus thermophilus LMD-9

47.764

83.134

0.397

  clpC Streptococcus thermophilus LMG 18311

47.444

83.134

0.394

  clpC Streptococcus mutans UA159

46.25

84.993

0.393


Multiple sequence alignment