Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FF104_RS20905 Genome accession   NZ_CP040627
Coordinates   629085..629279 (-) Length   64 a.a.
NCBI ID   WP_035761489.1    Uniprot ID   -
Organism   Clostridium butyricum strain DSM 10702     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 624085..634279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF104_RS21600 - 624289..624450 (-) 162 WP_162830848.1 hypothetical protein -
  FF104_RS20880 (FF104_20665) - 624738..625064 (-) 327 WP_035765555.1 hypothetical protein -
  FF104_RS20885 - 625074..625226 (-) 153 WP_161619010.1 hypothetical protein -
  FF104_RS20890 (FF104_20670) - 625637..626581 (+) 945 WP_242830187.1 transposase -
  FF104_RS20895 (FF104_20675) - 626863..628185 (-) 1323 Protein_560 IS3 family transposase -
  FF104_RS20900 (FF104_20680) - 628415..629062 (-) 648 WP_051119201.1 DUF2625 family protein -
  FF104_RS20905 (FF104_20685) nucA/comI 629085..629279 (-) 195 WP_035761489.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FF104_RS20910 (FF104_20690) - 629748..630461 (-) 714 WP_141912308.1 tetratricopeptide repeat protein -
  FF104_RS20915 (FF104_20695) - 630477..630896 (-) 420 WP_141912310.1 ankyrin repeat domain-containing protein -
  FF104_RS20920 (FF104_20700) - 630893..631138 (-) 246 WP_080646815.1 GH-E family nuclease -
  FF104_RS20925 (FF104_20705) - 631181..632321 (-) 1141 Protein_566 IS3 family transposase -
  FF104_RS20930 (FF104_20710) - 632716..633159 (-) 444 WP_035763352.1 hypothetical protein -

Sequence

Protein


Download         Length: 64 a.a.        Molecular weight: 7036.91 Da        Isoelectric Point: 9.5119

>NTDB_id=365991 FF104_RS20905 WP_035761489.1 629085..629279(-) (nucA/comI) [Clostridium butyricum strain DSM 10702]
MKGIDKVPGKDLDEYPPTMFKEGGNDASVRPINPSDNRGAGSTFGHKLRPYPNGTKIKYKITDD

Nucleotide


Download         Length: 195 bp        

>NTDB_id=365991 FF104_RS20905 WP_035761489.1 629085..629279(-) (nucA/comI) [Clostridium butyricum strain DSM 10702]
TTGAAAGGCATAGATAAAGTTCCAGGAAAGGATTTAGACGAATATCCACCTACTATGTTCAAAGAAGGTGGTAATGATGC
AAGTGTTAGACCTATTAATCCTTCTGATAATAGAGGGGCAGGGTCAACTTTCGGACATAAATTAAGACCATATCCGAATG
GAACCAAAATTAAGTATAAAATAACTGATGACTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(8-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

52.459

95.313

0.5

Multiple sequence alignment