Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FF960_RS02840 Genome accession   NZ_CP040625
Coordinates   589193..589762 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JKD6004-DR     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 584193..594762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF960_RS02815 (FF960_02830) cysE 585406..586053 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  FF960_RS02820 (FF960_02835) cysS 586037..587437 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  FF960_RS02825 (FF960_02840) - 587430..587834 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  FF960_RS02830 (FF960_02845) rlmB 587842..588588 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FF960_RS02835 (FF960_02850) - 588588..589112 (+) 525 WP_000664738.1 NYN domain-containing protein -
  FF960_RS02840 (FF960_02855) sigH 589193..589762 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  FF960_RS02845 (FF960_02860) rpmG 589877..590020 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  FF960_RS02850 (FF960_02865) secE 590076..590258 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  FF960_RS02855 (FF960_02870) nusG 590271..590819 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  FF960_RS02860 (FF960_02875) rplK 591000..591422 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  FF960_RS02865 (FF960_02880) rplA 591630..592322 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  FF960_RS02875 (FF960_02890) rplJ 592594..593094 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  FF960_RS02880 (FF960_02895) rplL 593137..593505 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  FF960_RS02885 (FF960_02900) - 593680..594288 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=365937 FF960_RS02840 WP_000872873.1 589193..589762(+) (sigH) [Staphylococcus aureus strain JKD6004-DR]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=365937 FF960_RS02840 WP_000872873.1 589193..589762(+) (sigH) [Staphylococcus aureus strain JKD6004-DR]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment