Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SMUNN2025_RS03695 Genome accession   NC_013928
Coordinates   748730..749623 (-) Length   297 a.a.
NCBI ID   WP_012997702.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 743730..754623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS03695 (SmuNN2025_0712) irvR 748730..749623 (-) 894 WP_012997702.1 LexA family transcriptional regulator IrvR Regulator
  SMUNN2025_RS03700 (SmuNN2025_0713) - 749939..750223 (+) 285 WP_002262720.1 helix-turn-helix transcriptional regulator -
  SMUNN2025_RS03705 (SmuNN2025_0714) gbpC 750386..752137 (+) 1752 WP_002275415.1 glucan-binding protein GbpC -
  SMUNN2025_RS10615 - 752267..752497 (+) 231 WP_002278030.1 hypothetical protein -
  SMUNN2025_RS10695 (SmuNN2025_0715) - 752532..752660 (+) 129 WP_002262718.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33711.46 Da        Isoelectric Point: 6.7038

>NTDB_id=36588 SMUNN2025_RS03695 WP_012997702.1 748730..749623(-) (irvR) [Streptococcus mutans NN2025]
MGRGKLTPQDLEAMKTISTNLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDETTEDKVADKSNHTQYQKVVDSFIAKELNDQTI
IHWDNVIKAKDLYQTFGRQYENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALIVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=36588 SMUNN2025_RS03695 WP_012997702.1 748730..749623(-) (irvR) [Streptococcus mutans NN2025]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGACTATTTCTACCAATCTTCAAAGACTTCTAGCTGA
GAGTGGAATGAAACAATCTCACTTAGCTACTATCCTTAACATTCCTACAAGTAGTCTTAACGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTACTTTGGTTTACAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTACCAACAATCAAAAGAACAAGATGAAACAGCAAGCTTGTCTGCCAGTGATGAAACGACTGAGGATAAAG
TTGCTGACAAATCAAATCATACGCAGTATCAAAAGGTTGTTGATTCTTTTATTGCCAAAGAATTAAACGATCAGACAATT
ATTCATTGGGATAATGTGATAAAAGCTAAGGATTTGTATCAAACCTTTGGACGTCAATACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTATTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTCATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(22-70)

Peptidase S24-like (Peptidase_S24)

(184-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

99.327

100

0.993

Multiple sequence alignment