Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   FBF22_RS05555 Genome accession   NZ_CP040618
Coordinates   1083238..1084188 (+) Length   316 a.a.
NCBI ID   WP_002884485.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093260     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1069282..1089000 1083238..1084188 within 0


Gene organization within MGE regions


Location: 1069282..1089000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF22_RS05490 (FBF22_05505) pglI 1069282..1070211 (-) 930 WP_002884081.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  FBF22_RS05495 (FBF22_05510) pglH 1070204..1071283 (-) 1080 WP_079264332.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  FBF22_RS05500 (FBF22_05515) pglK 1071280..1072974 (-) 1695 WP_002935022.1 ABC-type lipopolysaccharide transporter PglK -
  FBF22_RS05505 (FBF22_05520) galE 1072968..1073954 (-) 987 WP_165433263.1 UDP-glucose 4-epimerase GalE -
  FBF22_RS05510 (FBF22_05525) - 1074013..1074807 (-) 795 WP_052777648.1 3'-5' exonuclease -
  FBF22_RS05515 (FBF22_05530) waaC 1074874..1075902 (+) 1029 WP_002884086.1 lipopolysaccharide heptosyltransferase I -
  FBF22_RS05520 (FBF22_05535) htrB 1075892..1076779 (+) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  FBF22_RS05525 (FBF22_05540) - 1076776..1078326 (+) 1551 WP_002867216.1 glycosyltransferase -
  FBF22_RS05530 (FBF22_05545) - 1078295..1079182 (-) 888 WP_115768225.1 glycosyltransferase family 2 protein -
  FBF22_RS05535 (FBF22_05550) - 1079175..1080383 (-) 1209 WP_052847090.1 glycosyltransferase family 2 protein -
  FBF22_RS05540 (FBF22_05555) - 1080461..1081435 (-) 975 WP_100614661.1 glycosyltransferase family 2 protein -
  FBF22_RS05545 (FBF22_05560) - 1081428..1082316 (-) 889 Protein_1083 glycosyltransferase -
  FBF22_RS05550 (FBF22_05565) - 1082370..1083179 (-) 810 WP_002884487.1 glycosyltransferase family 2 protein -
  FBF22_RS05555 (FBF22_05570) waaF 1083238..1084188 (+) 951 WP_002884485.1 lipopolysaccharide heptosyltransferase II Regulator
  FBF22_RS05560 (FBF22_05575) - 1084174..1084938 (-) 765 WP_002884483.1 glycosyltransferase family 25 protein -
  FBF22_RS05565 (FBF22_05580) gmhA 1084938..1085498 (-) 561 WP_002869619.1 D-sedoheptulose 7-phosphate isomerase -
  FBF22_RS05570 (FBF22_05585) rfaE1 1085495..1086880 (-) 1386 WP_002884480.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  FBF22_RS05575 (FBF22_05590) rfaD 1086873..1087826 (-) 954 WP_052777643.1 ADP-glyceromanno-heptose 6-epimerase -
  FBF22_RS05580 (FBF22_05595) gmhB 1087827..1088388 (-) 562 Protein_1090 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  FBF22_RS05585 (FBF22_05600) - 1088469..1088771 (+) 303 WP_002852762.1 cytochrome c -
  FBF22_RS05590 (FBF22_05605) ccoS 1088794..1089000 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36240.79 Da        Isoelectric Point: 10.2878

>NTDB_id=365784 FBF22_RS05555 WP_002884485.1 1083238..1084188(+) (waaF) [Campylobacter sp. CFSAN093260]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGNAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=365784 FBF22_RS05555 WP_002884485.1 1083238..1084188(+) (waaF) [Campylobacter sp. CFSAN093260]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAATGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.332

99.051

0.915

Multiple sequence alignment