Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   FBF20_RS05885 Genome accession   NZ_CP040617
Coordinates   1121104..1122063 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093259     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1101399..1134284 1121104..1122063 within 0


Gene organization within MGE regions


Location: 1101399..1134284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF20_RS05790 (FBF20_05850) pglI 1101399..1102328 (-) 930 WP_002890470.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  FBF20_RS05795 (FBF20_05855) pglH 1102321..1103400 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  FBF20_RS05800 (FBF20_05860) pglK 1103397..1105091 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  FBF20_RS05805 (FBF20_05865) galE 1105085..1106071 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  FBF20_RS05810 (FBF20_05870) - 1106129..1106923 (-) 795 WP_002853812.1 3'-5' exonuclease -
  FBF20_RS05815 (FBF20_05875) waaC 1106989..1108017 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  FBF20_RS05820 (FBF20_05880) htrB 1108007..1108894 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  FBF20_RS05825 (FBF20_05885) - 1108891..1110438 (+) 1548 WP_002858148.1 glycosyltransferase -
  FBF20_RS05830 (FBF20_05890) - 1110442..1111614 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  FBF20_RS05835 (FBF20_05895) - 1111598..1112593 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  FBF20_RS05840 (FBF20_05900) - 1112651..1113820 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  FBF20_RS05845 (FBF20_05905) wlaN 1113809..1114722 (-) 914 Protein_1139 beta-1,3 galactosyltransferase -
  FBF20_RS05850 (FBF20_05910) - 1114777..1115661 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  FBF20_RS05855 (FBF20_05915) neuB1 1115642..1116673 (+) 1032 WP_002858213.1 sialic acid synthase -
  FBF20_RS05860 (FBF20_05920) neuC 1116670..1117785 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  FBF20_RS09110 - 1117782..1118696 (+) 915 Protein_1143 beta-1,4-N-acetylgalactosaminyltransferase -
  FBF20_RS09115 - 1118730..1119392 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  FBF20_RS05875 (FBF20_05930) - 1119387..1120237 (-) 851 Protein_1145 glycosyltransferase -
  FBF20_RS05880 (FBF20_05935) - 1120221..1121045 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  FBF20_RS05885 (FBF20_05940) waaF 1121104..1122063 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  FBF20_RS05890 (FBF20_05945) gmhA 1122044..1122604 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  FBF20_RS05895 (FBF20_05950) rfaE1 1122601..1123986 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  FBF20_RS05900 (FBF20_05955) rfaD 1123979..1124932 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  FBF20_RS05905 (FBF20_05960) gmhB 1124933..1125493 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  FBF20_RS05910 (FBF20_05965) - 1125575..1125877 (+) 303 WP_002852762.1 cytochrome c -
  FBF20_RS05915 (FBF20_05970) ccoS 1125900..1126106 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  FBF20_RS05920 (FBF20_05975) - 1126103..1128460 (-) 2358 WP_072224466.1 heavy metal translocating P-type ATPase -
  FBF20_RS05925 (FBF20_05980) rho 1128569..1129867 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  FBF20_RS05930 (FBF20_05985) - 1129871..1131400 (+) 1530 WP_168952608.1 DNA polymerase III subunit gamma/tau -
  FBF20_RS09080 (FBF20_05990) - 1131397..1131624 (-) 228 WP_002868592.1 DUF2165 family protein -
  FBF20_RS09085 (FBF20_06000) - 1131740..1131919 (-) 180 WP_002868591.1 DUF2165 family protein -
  FBF20_RS05945 (FBF20_06005) copA 1131991..1134090 (-) 2100 WP_168952609.1 copper-translocating P-type ATPase CopA -
  FBF20_RS05950 (FBF20_06010) - 1134090..1134284 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=365757 FBF20_RS05885 WP_002875425.1 1121104..1122063(+) (waaF) [Campylobacter sp. CFSAN093259]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=365757 FBF20_RS05885 WP_002875425.1 1121104..1122063(+) (waaF) [Campylobacter sp. CFSAN093259]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment