Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   FBF19_RS07155 Genome accession   NZ_CP040615
Coordinates   1408310..1408918 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter sp. CFSAN093256     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403310..1413918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF19_RS07130 (FBF19_07190) - 1403467..1404231 (+) 765 WP_002851318.1 TIGR02757 family protein -
  FBF19_RS07135 (FBF19_07195) - 1404235..1404999 (+) 765 WP_002871861.1 TSUP family transporter -
  FBF19_RS07140 (FBF19_07200) ctsF 1404992..1406173 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  FBF19_RS07145 (FBF19_07205) ctsE 1406170..1407729 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  FBF19_RS07150 (FBF19_07210) ctsX 1407719..1408306 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBF19_RS07155 (FBF19_07215) ctsP 1408310..1408918 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF19_RS07160 (FBF19_07220) ctsD 1408911..1410323 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF19_RS07165 (FBF19_07225) ctsR 1410301..1410612 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=365740 FBF19_RS07155 WP_002851464.1 1408310..1408918(-) (ctsP) [Campylobacter sp. CFSAN093256]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=365740 FBF19_RS07155 WP_002851464.1 1408310..1408918(-) (ctsP) [Campylobacter sp. CFSAN093256]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment