Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   FBE87_RS07485 Genome accession   NZ_CP040613
Coordinates   1447454..1448041 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter sp. CFSAN093246     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442454..1453041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE87_RS07465 (FBE87_07500) - 1443202..1443966 (+) 765 WP_002851318.1 TIGR02757 family protein -
  FBE87_RS07470 (FBE87_07505) - 1443970..1444734 (+) 765 WP_100621807.1 TSUP family transporter -
  FBE87_RS07475 (FBE87_07510) ctsF 1444727..1445908 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  FBE87_RS07480 (FBE87_07515) ctsE 1445905..1447464 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  FBE87_RS07485 (FBE87_07520) ctsX 1447454..1448041 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBE87_RS07490 (FBE87_07525) ctsP 1448045..1448653 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBE87_RS07495 (FBE87_07530) ctsD 1448646..1450058 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBE87_RS07500 (FBE87_07535) ctsR 1450036..1450347 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=365712 FBE87_RS07485 WP_002851370.1 1447454..1448041(-) (ctsX) [Campylobacter sp. CFSAN093246]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=365712 FBE87_RS07485 WP_002851370.1 1447454..1448041(-) (ctsX) [Campylobacter sp. CFSAN093246]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment