Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FBE87_RS06905 Genome accession   NZ_CP040613
Coordinates   1322283..1323263 (+) Length   326 a.a.
NCBI ID   WP_285949239.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093246     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317283..1328263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE87_RS06880 (FBE87_06915) - 1318205..1318930 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  FBE87_RS06885 (FBE87_06920) - 1318939..1319277 (-) 339 WP_002852397.1 hypothetical protein -
  FBE87_RS06890 (FBE87_06925) - 1319279..1320586 (-) 1308 WP_038401615.1 NFACT family protein -
  FBE87_RS06895 (FBE87_06930) - 1320648..1321223 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  FBE87_RS06900 (FBE87_06935) - 1321220..1322209 (+) 990 WP_002864239.1 phospholipase A -
  FBE87_RS06905 (FBE87_06940) ceuB 1322283..1323263 (+) 981 WP_285949239.1 ABC transporter permease Machinery gene
  FBE87_RS06910 (FBE87_06945) - 1323256..1324194 (+) 939 WP_038816948.1 iron chelate uptake ABC transporter family permease subunit -
  FBE87_RS06915 (FBE87_06950) - 1324191..1324946 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  FBE87_RS06920 (FBE87_06955) ceuB 1324959..1325951 (+) 993 WP_100621851.1 enterochelin ABC transporter substrate-binding protein CeuB -
  FBE87_RS06930 (FBE87_06965) - 1326177..1326731 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35998.01 Da        Isoelectric Point: 9.7994

>NTDB_id=365707 FBE87_RS06905 WP_285949239.1 1322283..1323263(+) (ceuB) [Campylobacter sp. CFSAN093246]
MRKDLFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLT
QNKFVSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAIT
TFFAYALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSII
TSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLL
KRKVYA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=365707 FBE87_RS06905 WP_285949239.1 1322283..1323263(+) (ceuB) [Campylobacter sp. CFSAN093246]
ATAAGGAAAGATTTATTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAG
TTTATTTATAGGAGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTA
CAAGAATTCCTAGACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACG
CAAAATAAATTCGTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTT
TACTGGAGCATCTTTTTTCACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTT
TAAGAAAAATCAAACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACC
ACTTTTTTTGCCTATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGG
AAATTATGAATTGCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCA
TGGGTGAAGATATAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATC
ACTAGTTTAGTGATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGG
TGATAATCTTAGAAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGAC
TTGTCATCTTTCCTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTA
AAAAGGAAAGTTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(19-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

98.773

0.975

Multiple sequence alignment