Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   FBE87_RS03355 Genome accession   NZ_CP040613
Coordinates   635421..635858 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter sp. CFSAN093246     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630421..640858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE87_RS09200 - 630914..632065 (+) 1152 WP_237961707.1 sensor histidine kinase KdpD -
  FBE87_RS09205 - 632089..632733 (+) 645 WP_223209779.1 DUF4118 domain-containing protein -
  FBE87_RS03340 (FBE87_03350) uvrB 632835..634808 (-) 1974 WP_168977222.1 excinuclease ABC subunit UvrB -
  FBE87_RS03345 (FBE87_03355) - 634962..635192 (+) 231 WP_002852327.1 hypothetical protein -
  FBE87_RS03350 (FBE87_03360) - 635182..635424 (+) 243 WP_002854947.1 hypothetical protein -
  FBE87_RS03355 (FBE87_03365) Cj0683 635421..635858 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FBE87_RS03360 (FBE87_03370) - 635840..637693 (+) 1854 WP_002860009.1 primosomal protein N' -
  FBE87_RS03365 (FBE87_03375) - 637703..639098 (-) 1396 Protein_645 DUF2972 domain-containing protein -
  FBE87_RS03370 (FBE87_03380) ispG 639244..640317 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=365696 FBE87_RS03355 WP_002852324.1 635421..635858(+) (Cj0683) [Campylobacter sp. CFSAN093246]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=365696 FBE87_RS03355 WP_002852324.1 635421..635858(+) (Cj0683) [Campylobacter sp. CFSAN093246]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment