Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   FBE96_RS03370 Genome accession   NZ_CP040612
Coordinates   648983..649420 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter sp. CFSAN093241     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643983..654420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE96_RS08590 - 644615..645627 (+) 1013 Protein_642 sensor histidine kinase KdpD -
  FBE96_RS08595 - 645651..646295 (+) 645 WP_236343220.1 DUF4118 domain-containing protein -
  FBE96_RS03355 (FBE96_03380) uvrB 646397..648370 (-) 1974 WP_002872078.1 excinuclease ABC subunit UvrB -
  FBE96_RS03360 (FBE96_03385) - 648524..648754 (+) 231 WP_002852327.1 hypothetical protein -
  FBE96_RS03365 (FBE96_03390) - 648744..648986 (+) 243 WP_002854947.1 hypothetical protein -
  FBE96_RS03370 (FBE96_03395) Cj0683 648983..649420 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FBE96_RS03375 (FBE96_03400) - 649402..651255 (+) 1854 WP_002872079.1 primosomal protein N' -
  FBE96_RS03380 (FBE96_03405) - 651265..652660 (-) 1396 Protein_649 DUF2972 domain-containing protein -
  FBE96_RS03385 (FBE96_03410) ispG 652804..653877 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=365669 FBE96_RS03370 WP_002852324.1 648983..649420(+) (Cj0683) [Campylobacter sp. CFSAN093241]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=365669 FBE96_RS03370 WP_002852324.1 648983..649420(+) (Cj0683) [Campylobacter sp. CFSAN093241]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment