Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   FBF21_RS07415 Genome accession   NZ_CP040611
Coordinates   1446044..1447228 (-) Length   394 a.a.
NCBI ID   WP_002868491.1    Uniprot ID   A0A0Q3JWH1
Organism   Campylobacter sp. CFSAN093238     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1441044..1452228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF21_RS07390 (FBF21_07425) fliL 1442192..1442728 (+) 537 WP_002780442.1 flagellar basal body-associated protein FliL -
  FBF21_RS07395 (FBF21_07430) acpS 1442728..1443075 (+) 348 WP_002780441.1 holo-ACP synthase -
  FBF21_RS07400 (FBF21_07435) - 1443076..1443495 (-) 420 WP_002780440.1 hypothetical protein -
  FBF21_RS07405 (FBF21_07440) - 1443492..1444853 (-) 1362 WP_002875992.1 cytochrome P450 -
  FBF21_RS07410 (FBF21_07445) - 1444850..1445971 (-) 1122 WP_002860382.1 hypothetical protein -
  FBF21_RS07415 (FBF21_07450) kpsS 1446044..1447228 (-) 1185 WP_002868491.1 capsule polysaccharide modification protein KpsS Regulator
  FBF21_RS07420 (FBF21_07455) - 1447225..1449294 (-) 2070 WP_002875993.1 capsular polysaccharide biosynthesis protein -
  FBF21_RS07425 (FBF21_07460) - 1449291..1449803 (-) 513 WP_002875994.1 cytidine diphosphoramidate kinase -
  FBF21_RS07430 (FBF21_07465) - 1449793..1450554 (-) 762 WP_002869138.1 CTP:phosphoglutamine cytidylyltransferase -
  FBF21_RS07435 (FBF21_07470) - 1450556..1451158 (-) 603 WP_002860377.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46855.56 Da        Isoelectric Point: 9.9031

>NTDB_id=365654 FBF21_RS07415 WP_002868491.1 1446044..1447228(-) (kpsS) [Campylobacter sp. CFSAN093238]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=365654 FBF21_RS07415 WP_002868491.1 1446044..1447228(-) (kpsS) [Campylobacter sp. CFSAN093238]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGACCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGCGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAATAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGTATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0Q3JWH1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.731

100

0.987


Multiple sequence alignment