Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   FBF21_RS06110 Genome accession   NZ_CP040611
Coordinates   1180261..1181220 (+) Length   319 a.a.
NCBI ID   WP_002876195.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093238     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1160557..1193436 1180261..1181220 within 0


Gene organization within MGE regions


Location: 1160557..1193436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF21_RS06015 (FBF21_06050) pglI 1160557..1161486 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  FBF21_RS06020 (FBF21_06055) pglH 1161479..1162558 (-) 1080 WP_079264556.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  FBF21_RS06025 (FBF21_06060) pglK 1162555..1164249 (-) 1695 WP_002869587.1 ABC-type lipopolysaccharide transporter PglK -
  FBF21_RS06030 (FBF21_06065) galE 1164243..1165229 (-) 987 WP_165433017.1 UDP-glucose 4-epimerase GalE -
  FBF21_RS06035 (FBF21_06070) - 1165288..1166082 (-) 795 WP_002860221.1 3'-5' exonuclease -
  FBF21_RS06040 (FBF21_06075) waaC 1166148..1167176 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  FBF21_RS06045 (FBF21_06080) htrB 1167166..1168053 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  FBF21_RS06050 (FBF21_06085) - 1168050..1169597 (+) 1548 WP_002858148.1 glycosyltransferase -
  FBF21_RS06055 (FBF21_06090) - 1169601..1170773 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  FBF21_RS06060 (FBF21_06095) - 1170757..1171752 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  FBF21_RS06065 (FBF21_06100) - 1171810..1172979 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  FBF21_RS06070 (FBF21_06105) wlaN 1172968..1173880 (-) 913 Protein_1195 beta-1,3 galactosyltransferase -
  FBF21_RS06075 (FBF21_06110) - 1173935..1174819 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  FBF21_RS06080 (FBF21_06115) neuB1 1174800..1175831 (+) 1032 WP_002858213.1 sialic acid synthase -
  FBF21_RS06085 (FBF21_06120) neuC 1175828..1176943 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  FBF21_RS09460 - 1176940..1177854 (+) 915 Protein_1199 beta-1,4-N-acetylgalactosaminyltransferase -
  FBF21_RS09465 - 1177888..1178550 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  FBF21_RS06100 (FBF21_06130) - 1178545..1179394 (-) 850 Protein_1201 glycosyltransferase -
  FBF21_RS06105 (FBF21_06135) - 1179378..1180202 (-) 825 WP_052796721.1 glycosyltransferase family 2 protein -
  FBF21_RS06110 (FBF21_06140) waaF 1180261..1181220 (+) 960 WP_002876195.1 lipopolysaccharide heptosyltransferase II Regulator
  FBF21_RS06115 (FBF21_06145) gmhA 1181201..1181761 (-) 561 WP_002876196.1 D-sedoheptulose 7-phosphate isomerase -
  FBF21_RS06120 (FBF21_06150) rfaE1 1181758..1183143 (-) 1386 WP_002910336.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  FBF21_RS06125 (FBF21_06155) rfaD 1183136..1184089 (-) 954 WP_002886910.1 ADP-glyceromanno-heptose 6-epimerase -
  FBF21_RS06130 (FBF21_06160) gmhB 1184090..1184651 (-) 562 Protein_1207 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  FBF21_RS06135 (FBF21_06165) - 1184732..1185034 (+) 303 WP_002852762.1 cytochrome c -
  FBF21_RS06140 (FBF21_06170) ccoS 1185057..1185263 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  FBF21_RS06145 (FBF21_06175) - 1185260..1187617 (-) 2358 WP_079263609.1 heavy metal translocating P-type ATPase -
  FBF21_RS06150 (FBF21_06180) rho 1187726..1189024 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  FBF21_RS06155 (FBF21_06185) - 1189028..1190557 (+) 1530 WP_002869626.1 DNA polymerase III subunit gamma/tau -
  FBF21_RS09285 - 1190554..1191072 (-) 519 Protein_1213 DUF2165 family protein -
  FBF21_RS06170 (FBF21_06205) copA 1191143..1193242 (-) 2100 WP_002869627.1 copper-translocating P-type ATPase CopA -
  FBF21_RS06175 (FBF21_06210) - 1193242..1193436 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36607.08 Da        Isoelectric Point: 10.2870

>NTDB_id=365647 FBF21_RS06110 WP_002876195.1 1180261..1181220(+) (waaF) [Campylobacter sp. CFSAN093238]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide


Download         Length: 960 bp        

>NTDB_id=365647 FBF21_RS06110 WP_002876195.1 1180261..1181220(+) (waaF) [Campylobacter sp. CFSAN093238]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTAGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.025

99.687

0.937

Multiple sequence alignment