Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   FBF06_RS03680 Genome accession   NZ_CP040610
Coordinates   683571..684008 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter sp. CFSAN093227     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678571..689008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF06_RS09720 - 679061..680212 (+) 1152 WP_248276712.1 sensor histidine kinase KdpD -
  FBF06_RS09725 - 680236..680883 (+) 648 WP_234744507.1 DUF4118 domain-containing protein -
  FBF06_RS03665 (FBF06_03650) uvrB 680985..682958 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  FBF06_RS03670 (FBF06_03655) - 683112..683342 (+) 231 WP_002852327.1 hypothetical protein -
  FBF06_RS03675 (FBF06_03660) - 683332..683574 (+) 243 WP_002854947.1 hypothetical protein -
  FBF06_RS03680 (FBF06_03665) Cj0683 683571..684008 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FBF06_RS03685 (FBF06_03670) - 683990..685843 (+) 1854 WP_168977541.1 primosomal protein N' -
  FBF06_RS03690 (FBF06_03675) - 685853..687247 (-) 1395 WP_168977542.1 DUF2972 domain-containing protein -
  FBF06_RS03695 (FBF06_03680) ispG 687393..688466 (+) 1074 WP_168977543.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=365613 FBF06_RS03680 WP_002852324.1 683571..684008(+) (Cj0683) [Campylobacter sp. CFSAN093227]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=365613 FBF06_RS03680 WP_002852324.1 683571..684008(+) (Cj0683) [Campylobacter sp. CFSAN093227]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment