Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   FBF11_RS07085 Genome accession   NZ_CP040607
Coordinates   1388410..1389591 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter sp. CFSAN093224     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383410..1394591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF11_RS07055 (FBF11_07105) - 1383955..1384296 (+) 342 WP_057042188.1 hypothetical protein -
  FBF11_RS07060 (FBF11_07110) flgM 1384359..1384556 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  FBF11_RS07065 (FBF11_07115) - 1384598..1385032 (+) 435 WP_002779263.1 flagellar protein FlgN -
  FBF11_RS07070 (FBF11_07120) flgK 1385042..1386868 (+) 1827 WP_057096946.1 flagellar hook-associated protein FlgK -
  FBF11_RS07075 (FBF11_07125) - 1386885..1387649 (+) 765 WP_002868230.1 TIGR02757 family protein -
  FBF11_RS07080 (FBF11_07130) - 1387653..1388417 (+) 765 WP_002855821.1 TSUP family transporter -
  FBF11_RS07085 (FBF11_07135) ctsF 1388410..1389591 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  FBF11_RS07090 (FBF11_07140) ctsE 1389588..1391147 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  FBF11_RS07095 (FBF11_07145) ctsX 1391137..1391724 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBF11_RS07100 (FBF11_07150) ctsP 1391728..1392336 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF11_RS07105 (FBF11_07155) ctsD 1392329..1393741 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF11_RS07110 (FBF11_07160) ctsR 1393719..1394030 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=365571 FBF11_RS07085 WP_002868229.1 1388410..1389591(-) (ctsF) [Campylobacter sp. CFSAN093224]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=365571 FBF11_RS07085 WP_002868229.1 1388410..1389591(-) (ctsF) [Campylobacter sp. CFSAN093224]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment