Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   FBF11_RS06825 Genome accession   NZ_CP040607
Coordinates   1335466..1336650 (-) Length   394 a.a.
NCBI ID   WP_002855724.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093224     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1330466..1341650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF11_RS06800 (FBF11_06850) fliL 1331613..1332149 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  FBF11_RS06805 (FBF11_06855) acpS 1332150..1332497 (+) 348 WP_002856648.1 holo-ACP synthase -
  FBF11_RS06810 (FBF11_06860) - 1332498..1332917 (-) 420 WP_002780440.1 hypothetical protein -
  FBF11_RS06815 (FBF11_06865) - 1332914..1334275 (-) 1362 WP_002855843.1 cytochrome P450 -
  FBF11_RS06820 (FBF11_06870) - 1334272..1335393 (-) 1122 WP_002855346.1 hypothetical protein -
  FBF11_RS06825 (FBF11_06875) kpsS 1335466..1336650 (-) 1185 WP_002855724.1 capsule polysaccharide modification protein KpsS Regulator
  FBF11_RS06830 (FBF11_06880) - 1336679..1338745 (-) 2067 WP_057096954.1 capsular polysaccharide biosynthesis protein -
  FBF11_RS06835 (FBF11_06885) - 1338742..1339254 (-) 513 WP_057042300.1 cytidine diphosphoramidate kinase -
  FBF11_RS06840 (FBF11_06890) - 1339244..1340005 (-) 762 WP_002856271.1 CTP:phosphoglutamine cytidylyltransferase -
  FBF11_RS06845 (FBF11_06895) - 1340007..1340609 (-) 603 WP_057042301.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46834.56 Da        Isoelectric Point: 9.9031

>NTDB_id=365570 FBF11_RS06825 WP_002855724.1 1335466..1336650(-) (kpsS) [Campylobacter sp. CFSAN093224]
MKISKKLQQEFTSKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYIHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLKTTQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=365570 FBF11_RS06825 WP_002855724.1 1335466..1336650(-) (kpsS) [Campylobacter sp. CFSAN093224]
ATGAAAATTTCTAAAAAATTGCAGCAAGAATTTACTAGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAGTGAAAATGAGAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGCGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGTAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAACTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAATCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGTTATAAGAATTATTCTAAACTCATAAACGATTTAAGTCAAAAATATCATGTAG
AAGGAAGAGTTTTATATATTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTAAAGACAACACAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

96.193

100

0.962


Multiple sequence alignment