Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   FBF11_RS03335 Genome accession   NZ_CP040607
Coordinates   637136..637573 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter sp. CFSAN093224     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632136..642573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF11_RS08460 - 632630..633781 (+) 1152 WP_237916086.1 sensor histidine kinase KdpD -
  FBF11_RS08465 - 633805..634215 (+) 411 WP_237916087.1 DUF4118 domain-containing protein -
  FBF11_RS08470 - 634296..634448 (+) 153 WP_237916088.1 hypothetical protein -
  FBF11_RS03320 (FBF11_03335) uvrB 634550..636523 (-) 1974 WP_043012826.1 excinuclease ABC subunit UvrB -
  FBF11_RS03325 (FBF11_03340) - 636677..636907 (+) 231 WP_002852327.1 hypothetical protein -
  FBF11_RS03330 (FBF11_03345) - 636897..637139 (+) 243 WP_002854947.1 hypothetical protein -
  FBF11_RS03335 (FBF11_03350) Cj0683 637136..637573 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FBF11_RS03340 (FBF11_03355) - 637555..639408 (+) 1854 WP_002860009.1 primosomal protein N' -
  FBF11_RS03345 (FBF11_03360) - 639418..640816 (-) 1399 Protein_647 DUF2972 domain-containing protein -
  FBF11_RS03350 (FBF11_03365) ispG 640962..642035 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=365558 FBF11_RS03335 WP_002852324.1 637136..637573(+) (Cj0683) [Campylobacter sp. CFSAN093224]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=365558 FBF11_RS03335 WP_002852324.1 637136..637573(+) (Cj0683) [Campylobacter sp. CFSAN093224]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment