Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LROSL1_RS10440 Genome accession   NZ_CP040586
Coordinates   2151355..2152722 (-) Length   455 a.a.
NCBI ID   WP_161004571.1    Uniprot ID   -
Organism   Furfurilactobacillus rossiae strain L1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2146355..2157722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LROSL1_RS10430 (LROSL1_2008) gltX 2148299..2149786 (-) 1488 WP_017260996.1 glutamate--tRNA ligase -
  LROSL1_RS10435 (LROSL1_2009) - 2149996..2151300 (-) 1305 WP_178914514.1 PIN/TRAM domain-containing protein -
  LROSL1_RS10440 (LROSL1_2010) radA 2151355..2152722 (-) 1368 WP_161004571.1 DNA repair protein RadA Machinery gene
  LROSL1_RS10445 (LROSL1_2011) - 2152888..2153430 (-) 543 WP_178914515.1 dUTP diphosphatase -
  LROSL1_RS10450 (LROSL1_2012) - 2153627..2153899 (+) 273 WP_017260992.1 N-acetyltransferase -
  LROSL1_RS10455 (LROSL1_2013) rpiA 2153921..2154601 (+) 681 WP_026017055.1 ribose-5-phosphate isomerase RpiA -
  LROSL1_RS10460 (LROSL1_2014) - 2154742..2155413 (-) 672 WP_178914516.1 phosphatase PAP2 family protein -
  LROSL1_RS10465 (LROSL1_2015) - 2155686..2156528 (+) 843 WP_178914517.1 sulfite exporter TauE/SafE family protein -
  LROSL1_RS10470 (LROSL1_2016) - 2156528..2156917 (+) 390 WP_178914518.1 DUF1634 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49618.82 Da        Isoelectric Point: 6.1922

>NTDB_id=365461 LROSL1_RS10440 WP_161004571.1 2151355..2152722(-) (radA) [Furfurilactobacillus rossiae strain L1]
MAKTKTQFVCQNCGYNSPRYLGRCPNCGEWNTLVEEKIADEVPNRKSRVSLGGETAKAELIKDVSLEEVPRVKTSLKEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLTQVSGQLGSKGRVLYVSGEESATQIKMRADRLGVGGDDFYLYPETDMSNIREQ
ITTLNPEFVIIDSVQTMQEPDITSAVGSVSQIREVTAELMQIAKTNRITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMREDGLREVANPSEIFLEERLTGATGSSIVVSMEGTRPILVEVQALVTPSVFGN
AQRTAQGLDRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKETNPSDSFVGEVGLTGE
IRRVNRIEQRVAEAQKLGFKRIYIPKNNLQGWTPPTDIEVIGVTTISQALKLALA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=365461 LROSL1_RS10440 WP_161004571.1 2151355..2152722(-) (radA) [Furfurilactobacillus rossiae strain L1]
GTGGCAAAAACTAAAACACAATTTGTTTGTCAAAACTGTGGATATAATTCACCACGATATTTGGGTCGCTGCCCAAACTG
TGGTGAATGGAATACATTGGTTGAAGAGAAAATCGCTGATGAAGTTCCCAATCGTAAGTCGCGGGTAAGTCTTGGCGGCG
AAACAGCTAAGGCCGAATTAATCAAGGATGTTAGCCTTGAGGAGGTTCCTCGTGTCAAAACCAGTTTAAAGGAATTTAAC
CGTGTTCTTGGCGGTGGTGTGGTGCCTGGCTCACTAGTTTTGATTGGTGGTGATCCTGGCATTGGTAAATCAACGTTATT
GACGCAGGTTTCTGGTCAGCTGGGCAGTAAGGGACGTGTCCTTTACGTGTCTGGTGAAGAAAGTGCCACCCAGATTAAGA
TGCGTGCTGATCGACTCGGTGTTGGCGGCGACGATTTTTATCTCTATCCAGAGACAGACATGAGTAATATTCGTGAACAA
ATCACAACATTAAATCCAGAATTTGTCATCATTGATTCGGTCCAAACCATGCAGGAACCAGATATTACCTCAGCAGTCGG
ATCAGTTTCTCAGATTCGTGAAGTGACGGCCGAGTTAATGCAAATTGCGAAAACAAATCGGATTACGATTTTTATCGTGG
GCCATGTCACTAAGGGTGGCGCTATCGCGGGACCAAAGATTTTGGAACACATGGTGGATACCGTTCTGTACTTTGAAGGC
GATTTGCATCACACGTACCGGATTCTGCGAGCTGTAAAAAATCGGTTTGGTTCAACTAATGAACTAGGAATTTTTGAGAT
GCGCGAAGACGGCTTGCGAGAGGTGGCTAACCCGTCTGAAATCTTCTTAGAAGAACGACTTACAGGTGCTACTGGTTCAT
CTATCGTGGTATCGATGGAAGGAACCAGGCCAATCTTGGTGGAAGTTCAGGCATTGGTTACACCCTCAGTTTTTGGGAAT
GCACAACGGACTGCTCAGGGATTGGATCGTAATCGGGTATCGCTAATTATGGCTGTTTTGGAAAAACGGGCTAACTTGAT
GTTGCAAAATCAAGACGCTTATTTAAAAGCGGCTGGTGGTGTGAAGCTCGATGAGCCGGCCATTGACCTGGCAATTGCTG
TGGCGATCGCGTCAAGTTATCGTGATAAGGAGACAAATCCAAGTGATAGTTTCGTAGGTGAAGTTGGCCTGACCGGTGAA
ATTCGGCGTGTTAACCGGATTGAACAGCGGGTTGCTGAGGCACAGAAGCTGGGGTTCAAACGAATTTATATACCAAAGAA
TAATCTTCAGGGATGGACACCGCCAACTGATATTGAAGTGATTGGTGTGACAACGATCAGTCAAGCACTAAAACTAGCCT
TGGCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

71.648

100

0.716
  radA Streptococcus mitis SK321

71.648

100

0.716
  radA Streptococcus pneumoniae Rx1

71.429

100

0.714
  radA Streptococcus pneumoniae D39

71.429

100

0.714
  radA Streptococcus pneumoniae R6

71.429

100

0.714
  radA Streptococcus pneumoniae TIGR4

71.429

100

0.714
  radA Bacillus subtilis subsp. subtilis str. 168

67.544

100

0.677

Multiple sequence alignment