Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LROSL1_RS08830 Genome accession   NZ_CP040586
Coordinates   1840338..1842152 (-) Length   604 a.a.
NCBI ID   WP_178914385.1    Uniprot ID   -
Organism   Furfurilactobacillus rossiae strain L1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835338..1847152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LROSL1_RS08805 (LROSL1_1696) - 1836046..1836693 (+) 648 WP_178914381.1 copper homeostasis protein CutC -
  LROSL1_RS08810 (LROSL1_1697) - 1836803..1837756 (-) 954 WP_178914382.1 RluA family pseudouridine synthase -
  LROSL1_RS08815 (LROSL1_1698) - 1837756..1838559 (-) 804 WP_178914383.1 NAD kinase -
  LROSL1_RS08820 (LROSL1_1699) - 1838628..1839308 (-) 681 WP_178914384.1 GTP pyrophosphokinase family protein -
  LROSL1_RS08825 (LROSL1_1700) - 1839622..1840248 (+) 627 WP_017262793.1 DsbA family protein -
  LROSL1_RS08830 (LROSL1_1701) pepF 1840338..1842152 (-) 1815 WP_178914385.1 oligoendopeptidase F Regulator
  LROSL1_RS08835 (LROSL1_1702) - 1842210..1843265 (-) 1056 WP_178914386.1 competence protein CoiA -
  LROSL1_RS08840 (LROSL1_1703) - 1843536..1843724 (+) 189 WP_017262790.1 CsbD family protein -
  LROSL1_RS08845 (LROSL1_1704) - 1844092..1845231 (+) 1140 WP_225440517.1 hypothetical protein -
  LROSL1_RS08850 (LROSL1_1705) - 1845555..1846313 (-) 759 WP_017262785.1 adaptor protein MecA -
  LROSL1_RS08855 (LROSL1_1706) spxA 1846520..1846918 (-) 399 WP_026017224.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68758.34 Da        Isoelectric Point: 4.7631

>NTDB_id=365451 LROSL1_RS08830 WP_178914385.1 1840338..1842152(-) (pepF) [Furfurilactobacillus rossiae strain L1]
MADVKQLPTRDEVPETLKWDLTQIFATDAAWTDAYHQIESKLQQVTSYQGHLAESPEQLVAGVAYLLDVYHELENVDVYA
SLKQEQDTSDQAAQGLAAQANDLVAKVASALAWFQPEVLAIPEKTLNEWLDTTELKPFKHFFEDLDRARDHTLPADQEAL
LAGAGDIFQASAKTFGVLDNADLEFPIVKDEAGNDVRLTQGVYGVLLQSTDRSVRGAAFKQLYKVYKQFQNTFASTLSSN
VKAHNYTARVHHYPTARAAALAENNIPESVYDTLVEEVNNHLDLLHRYVSLRKRILGVDHLHSYDLYTPITGDSPLSYTY
PEAQQEALRALSVMGPDYVSHVQEAFDNRWVDVVETKGKRSGAFSSGVYDTNPYILLNWQDNLEELFTLVHEMGHSIHSY
YTRHNQPYQYGDYSIFVAEIASTTNENTLTQYLLDNNDDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEHWIHQEDAAGHP
LTASRMSDFYGKLNQTYYGKDLTPDPEITLEWSRIPHFYYNYYVFQYATGFAAASTLSHGITSHQQGALDHYLDFLKAGS
SQYPLDVMKMAGVDMTKPDYLRRAFDVFEQRLNEFEKLIDDSQK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=365451 LROSL1_RS08830 WP_178914385.1 1840338..1842152(-) (pepF) [Furfurilactobacillus rossiae strain L1]
ATGGCAGACGTAAAACAATTACCTACTAGAGATGAAGTTCCAGAGACGCTAAAGTGGGACTTAACTCAAATTTTTGCAAC
TGATGCGGCGTGGACAGACGCTTATCATCAAATTGAGTCAAAACTACAACAAGTAACGTCATATCAAGGACATTTAGCTG
AATCACCAGAGCAACTTGTAGCTGGCGTGGCTTACCTACTTGATGTTTACCATGAATTGGAAAATGTCGATGTGTATGCG
TCATTGAAACAAGAACAAGATACTAGTGATCAAGCAGCACAAGGATTGGCTGCCCAAGCTAATGACTTGGTGGCTAAGGT
TGCCAGCGCATTAGCTTGGTTTCAGCCAGAAGTCTTGGCCATTCCAGAAAAGACGCTCAATGAATGGCTGGATACGACTG
AGTTAAAGCCGTTCAAACATTTCTTTGAGGACTTAGATCGCGCACGTGATCATACATTACCGGCAGATCAAGAAGCATTA
TTGGCGGGAGCTGGAGATATTTTCCAAGCTTCGGCAAAAACGTTCGGTGTTTTGGATAACGCGGATTTAGAGTTCCCAAT
CGTGAAAGATGAGGCAGGCAACGATGTTCGTTTGACTCAGGGAGTATACGGCGTCCTGTTGCAATCAACAGATCGTTCTG
TTCGTGGTGCGGCCTTTAAACAACTATATAAGGTGTACAAGCAGTTCCAGAATACGTTTGCTTCGACGCTGTCTAGCAAC
GTTAAGGCACATAATTATACAGCGCGCGTGCATCATTACCCAACCGCTCGTGCTGCGGCATTAGCAGAAAATAATATTCC
TGAAAGTGTTTACGACACGCTTGTTGAAGAGGTTAATAACCATCTTGACCTATTACATCGTTATGTTAGTTTGCGCAAAC
GTATTTTAGGTGTTGATCATTTGCATTCTTATGACCTGTATACTCCAATTACTGGGGATTCACCGCTGAGTTACACCTAT
CCTGAAGCTCAACAAGAGGCATTACGCGCCTTATCTGTGATGGGCCCAGATTACGTTAGCCATGTTCAAGAGGCCTTTGA
TAATCGGTGGGTCGATGTGGTCGAAACGAAAGGCAAACGGAGTGGGGCGTTTTCATCTGGTGTTTACGATACTAATCCAT
ATATTTTGTTGAACTGGCAGGATAATTTAGAGGAATTATTTACCTTAGTTCACGAAATGGGCCATAGCATTCACAGTTAT
TACACGCGTCATAATCAACCCTATCAGTATGGCGACTACTCTATTTTCGTAGCGGAAATTGCATCGACAACTAATGAAAA
TACGTTGACTCAATATTTGCTTGATAATAATGACGACCCTAAAGTTCGGGCCTACGTTTTGAATCACTACCTGGATGGTT
TTAAAGGAACTGTTTATCGGCAAACACAATTCGCAGAATTCGAACACTGGATCCACCAGGAAGATGCCGCGGGTCATCCG
TTGACTGCTAGTCGGATGTCAGACTTTTATGGCAAGCTGAATCAAACATACTATGGGAAAGATTTAACCCCAGACCCGGA
GATTACTTTGGAGTGGTCACGAATTCCACATTTCTATTACAATTACTATGTCTTCCAATATGCAACTGGGTTCGCTGCTG
CCTCGACATTGTCACATGGTATTACCAGTCATCAACAAGGAGCCCTGGATCATTATTTGGACTTCTTAAAGGCCGGTAGT
TCACAATATCCATTGGACGTAATGAAGATGGCAGGAGTTGATATGACGAAGCCAGATTACTTGCGCCGAGCATTTGATGT
TTTTGAACAACGTTTGAATGAATTTGAAAAGTTAATTGACGATTCGCAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(117-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.858

98.013

0.508

Multiple sequence alignment