Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LROSRS0_RS10500 Genome accession   NZ_CP040576
Coordinates   2194465..2195832 (-) Length   455 a.a.
NCBI ID   WP_017260994.1    Uniprot ID   A0A0R1R9X5
Organism   Furfurilactobacillus rossiae strain RS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189465..2200832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LROSRS0_RS10490 (LROSRS0_2045) gltX 2191409..2192896 (-) 1488 WP_017260996.1 glutamate--tRNA ligase -
  LROSRS0_RS10495 (LROSRS0_2046) - 2193106..2194410 (-) 1305 WP_017260995.1 PIN/TRAM domain-containing protein -
  LROSRS0_RS10500 (LROSRS0_2047) radA 2194465..2195832 (-) 1368 WP_017260994.1 DNA repair protein RadA Machinery gene
  LROSRS0_RS10505 (LROSRS0_2048) - 2195998..2196540 (-) 543 WP_017260993.1 dUTPase -
  LROSRS0_RS10510 (LROSRS0_2049) - 2196737..2197009 (+) 273 WP_017260992.1 N-acetyltransferase -
  LROSRS0_RS10515 (LROSRS0_2050) rpiA 2197031..2197711 (+) 681 WP_026017055.1 ribose-5-phosphate isomerase RpiA -
  LROSRS0_RS10520 (LROSRS0_2051) - 2197852..2198523 (-) 672 WP_017260990.1 phosphatase PAP2 family protein -
  LROSRS0_RS10525 (LROSRS0_2052) - 2198796..2199638 (+) 843 WP_017260989.1 sulfite exporter TauE/SafE family protein -
  LROSRS0_RS10530 (LROSRS0_2053) - 2199638..2200027 (+) 390 WP_017260988.1 DUF1634 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49590.77 Da        Isoelectric Point: 6.1905

>NTDB_id=365434 LROSRS0_RS10500 WP_017260994.1 2194465..2195832(-) (radA) [Furfurilactobacillus rossiae strain RS]
MAKTKTQFVCQNCGYNSPRYLGRCPNCGEWNTLVEETIADEVPNRKSRVSLGGETAKAELIKDVSLEEVPRVKTSLKEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLTQVSGQLGSKGRVLYVSGEESATQIKMRADRLGVGGDNFYLYPETDMSNIREQ
ITTLNPEFVIIDSVQTMQEPDITSAVGSVSQIREVTAELMQIAKTNRITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMREDGLREVANPSEIFLEERLTGATGSSIVVSMEGTRPILVEVQALVTPSVFGN
AQRTAQGLDRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKETNPSDSFVGEVGLTGE
IRRVNRIEQRVAEAQKLGFKRIYIPKNNLQGWTPPTDIEVIGVTTISQALKLALA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=365434 LROSRS0_RS10500 WP_017260994.1 2194465..2195832(-) (radA) [Furfurilactobacillus rossiae strain RS]
GTGGCAAAAACTAAAACACAATTTGTTTGTCAAAACTGTGGATATAATTCACCACGATATTTGGGTCGCTGCCCAAACTG
TGGTGAATGGAATACATTGGTTGAAGAGACAATCGCTGATGAAGTTCCCAATCGTAAGTCGCGGGTAAGTCTTGGCGGCG
AAACAGCTAAGGCCGAATTAATCAAGGATGTTAGCCTTGAGGAGGTTCCTCGTGTCAAAACCAGTTTAAAGGAATTTAAC
CGTGTTCTTGGCGGTGGTGTGGTGCCTGGCTCACTAGTTTTGATTGGTGGTGATCCTGGCATTGGTAAATCAACGTTATT
GACGCAGGTTTCTGGTCAGCTGGGCAGTAAGGGACGTGTCCTTTACGTGTCTGGTGAAGAAAGTGCCACCCAGATTAAGA
TGCGTGCTGATCGACTCGGTGTTGGCGGCGACAATTTTTATCTCTATCCAGAGACAGACATGAGTAATATTCGTGAACAA
ATCACAACATTAAATCCAGAATTTGTCATCATTGATTCGGTCCAAACCATGCAGGAACCAGATATTACCTCAGCAGTCGG
ATCAGTTTCTCAGATTCGTGAAGTGACGGCCGAGTTAATGCAAATTGCGAAAACAAATCGGATTACGATTTTTATCGTGG
GCCATGTCACTAAGGGTGGCGCTATCGCGGGACCAAAGATTTTGGAACATATGGTGGATACCGTTCTGTACTTTGAAGGC
GATTTGCATCACACGTACCGGATTCTAAGAGCCGTTAAAAATCGGTTTGGCTCAACTAATGAACTGGGAATTTTTGAGAT
GCGAGAAGACGGCTTGCGAGAGGTGGCTAACCCGTCTGAAATCTTCTTAGAAGAACGACTTACAGGTGCTACTGGTTCAT
CTATCGTGGTATCGATGGAAGGAACCAGGCCAATCTTGGTGGAAGTTCAGGCATTGGTTACACCTTCAGTTTTTGGGAAT
GCACAACGGACTGCTCAGGGATTGGATCGTAATCGGGTATCGCTAATTATGGCTGTTTTGGAAAAACGGGCTAACTTGAT
GTTGCAAAATCAAGACGCTTATTTAAAAGCGGCTGGTGGTGTGAAGCTCGATGAGCCAGCCATTGACCTGGCAATTGCTG
TGGCGATCGCGTCAAGTTATCGTGATAAGGAGACGAATCCGAGTGATAGTTTTGTGGGCGAAGTTGGCCTGACCGGTGAA
ATTCGGCGTGTTAACCGGATTGAACAGCGGGTTGCTGAGGCACAGAAGCTGGGGTTCAAACGAATTTATATACCAAAGAA
TAATCTTCAGGGATGGACGCCGCCAACTGATATTGAAGTGATTGGTGTGACAACGATCAGTCAAGCACTAAAACTAGCCT
TGGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1R9X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

71.648

100

0.716
  radA Streptococcus mitis NCTC 12261

71.648

100

0.716
  radA Streptococcus pneumoniae Rx1

71.429

100

0.714
  radA Streptococcus pneumoniae D39

71.429

100

0.714
  radA Streptococcus pneumoniae R6

71.429

100

0.714
  radA Streptococcus pneumoniae TIGR4

71.429

100

0.714
  radA Bacillus subtilis subsp. subtilis str. 168

67.544

100

0.677

Multiple sequence alignment