Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LROSRS0_RS08460 Genome accession   NZ_CP040576
Coordinates   1827556..1829370 (-) Length   604 a.a.
NCBI ID   WP_017262792.1    Uniprot ID   -
Organism   Furfurilactobacillus rossiae strain RS     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822556..1834370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LROSRS0_RS08435 (LROSRS0_1663) - 1823264..1823911 (+) 648 WP_017262797.1 copper homeostasis protein CutC -
  LROSRS0_RS08440 (LROSRS0_1664) - 1824021..1824974 (-) 954 WP_017262796.1 RluA family pseudouridine synthase -
  LROSRS0_RS08445 (LROSRS0_1665) - 1824974..1825777 (-) 804 WP_017262795.1 NAD kinase -
  LROSRS0_RS08450 (LROSRS0_1666) - 1825846..1826526 (-) 681 WP_017262794.1 GTP pyrophosphokinase family protein -
  LROSRS0_RS08455 (LROSRS0_1667) - 1826840..1827466 (+) 627 WP_017262793.1 DsbA family protein -
  LROSRS0_RS08460 (LROSRS0_1668) pepF 1827556..1829370 (-) 1815 WP_017262792.1 oligoendopeptidase F Regulator
  LROSRS0_RS08465 (LROSRS0_1669) - 1829428..1830483 (-) 1056 WP_017262791.1 competence protein CoiA -
  LROSRS0_RS08470 (LROSRS0_1670) - 1830754..1830942 (+) 189 WP_017262790.1 CsbD family protein -
  LROSRS0_RS08475 (LROSRS0_1672) - 1831358..1831993 (+) 636 WP_017262789.1 hypothetical protein -
  LROSRS0_RS08480 (LROSRS0_1673) - 1832012..1832386 (+) 375 WP_017262788.1 hypothetical protein -
  LROSRS0_RS08485 (LROSRS0_1674) - 1832485..1833135 (+) 651 WP_017262787.1 hypothetical protein -
  LROSRS0_RS08490 (LROSRS0_1675) - 1833245..1833745 (+) 501 WP_017262786.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68741.31 Da        Isoelectric Point: 4.7631

>NTDB_id=365424 LROSRS0_RS08460 WP_017262792.1 1827556..1829370(-) (pepF) [Furfurilactobacillus rossiae strain RS]
MADVKQLPTRDEVPETLKWDLTQIFATDAAWTDAYHQIESKLQQVTSYQGHLAESPEQLVAGVAYLLDVYHELENVDVYA
SLKQEQDTSDQAAQGLAAQANDLVAKVASALAWFQPEVLAIPEKTLNEWLDTTELKPFKHFFEDLDRARDHTLPADQEAL
LAGAGDIFQASAKTFGVLDNADLEFPIVKDEAGNDVRLTQGVYGVLLQSTDRSVRGAAFKQLYKVYKQFQNTFASTLSSN
VKAHNYTARVHHYPNARAAALAENNIPESVYDTLVEEVNNHLDLLHRYVSLRKRILGVDHLHSYDLYTPITGDSPLSYTY
PEAQQEALRALSVMGPDYVSHVQEAFDNRWVDVVETKGKRSGAFSSGVYDTNPYILLNWQDNLEELFTLVHEMGHSIHSY
YTRHNQPYQYGDYSIFVAEIASTTNENTLTQYLLDNNDDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEHWIHQEDAAGHP
LTASRMSDFYGKLNQTYYGKDLTPDPEIALEWSRIPHFYYNYYVFQYATGFAAASTLSHGITSHQQGALDHYLDFLKAGS
SQYPLDVMKMAGVDMTKPDYLRRAFDVFEQRLNEFEKLIDDSQK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=365424 LROSRS0_RS08460 WP_017262792.1 1827556..1829370(-) (pepF) [Furfurilactobacillus rossiae strain RS]
ATGGCAGACGTAAAACAGTTACCTACTAGAGATGAAGTTCCAGAGACGCTAAAGTGGGACTTAACTCAAATTTTTGCAAC
TGACGCGGCGTGGACAGACGCTTATCATCAAATTGAGTCAAAACTACAACAAGTAACGTCATATCAAGGACATTTAGCTG
AATCACCAGAGCAACTTGTAGCTGGCGTGGCTTACTTACTTGATGTTTACCATGAATTGGAAAATGTCGATGTGTATGCG
TCATTGAAACAAGAACAAGATACTAGTGATCAAGCAGCACAAGGATTGGCTGCCCAAGCTAATGACTTGGTGGCTAAGGT
TGCTAGCGCATTAGCTTGGTTTCAGCCAGAAGTCTTGGCCATTCCAGAAAAGACGCTCAATGAATGGCTGGATACGACTG
AGTTAAAGCCGTTCAAACATTTCTTTGAGGACTTAGATCGCGCACGTGATCATACATTACCGGCAGATCAAGAAGCATTA
TTGGCGGGAGCTGGAGATATTTTCCAAGCTTCGGCAAAAACGTTCGGTGTTTTAGATAACGCGGATTTAGAGTTCCCAAT
CGTGAAAGATGAGGCAGGCAACGATGTTCGTTTGACTCAGGGGGTATATGGCGTCCTGTTGCAATCAACAGATCGTTCTG
TTCGTGGTGCGGCCTTTAAACAACTATATAAGGTGTACAAGCAGTTCCAGAATACGTTTGCTTCGACGCTGTCTAGCAAC
GTTAAGGCACATAATTATACGGCGCGCGTGCATCATTATCCAAACGCTCGTGCTGCGGCATTAGCGGAAAATAATATTCC
TGAAAGTGTTTACGACACGCTTGTTGAAGAGGTTAATAACCATCTTGACCTATTACATCGTTATGTTAGTTTGCGCAAAC
GTATTTTAGGTGTTGATCATTTGCATTCTTATGACCTGTATACTCCAATTACTGGGGATTCACCGCTGAGTTACACCTAT
CCTGAAGCTCAACAAGAGGCATTACGCGCCTTATCTGTGATGGGCCCAGATTACGTTAGCCATGTTCAAGAGGCCTTCGA
TAACCGGTGGGTCGATGTGGTCGAAACGAAAGGCAAACGGAGTGGGGCGTTTTCATCTGGTGTTTACGATACTAATCCAT
ATATTTTGTTGAACTGGCAGGATAATTTAGAGGAATTATTTACCTTAGTTCACGAAATGGGCCATAGCATTCACAGTTAT
TACACGCGTCATAATCAACCCTATCAGTATGGCGACTACTCTATTTTCGTAGCGGAAATTGCATCGACAACTAATGAAAA
TACGTTGACTCAATATTTGCTTGATAATAATGACGACCCTAAAGTTCGGGCCTACGTTTTGAATCACTACCTGGATGGTT
TTAAAGGAACTGTTTATCGGCAAACACAATTCGCAGAATTCGAACACTGGATCCACCAAGAAGATGCCGCGGGTCATCCG
TTGACTGCTAGTCGGATGTCAGACTTTTATGGCAAGCTGAATCAAACGTACTATGGGAAAGATTTAACCCCAGACCCGGA
GATTGCTTTGGAGTGGTCACGAATTCCACATTTCTATTACAATTACTATGTCTTCCAATATGCAACTGGGTTCGCTGCTG
CCTCGACATTGTCACATGGTATTACCAGTCATCAACAAGGAGCCCTGGATCATTATTTGGACTTCTTAAAGGCCGGTAGT
TCACAATATCCATTGGACGTAATGAAGATGGCAGGAGTTGATATGACGAAGCCAGATTACTTGCGCCGAGCATTTGATGT
TTTTGAACAACGTTTGAATGAATTTGAAAAGTTAATTGACGATTCGCAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(117-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.858

98.013

0.508

Multiple sequence alignment