Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FFM56_RS10325 Genome accession   NZ_CP040575
Coordinates   1968665..1969270 (+) Length   201 a.a.
NCBI ID   WP_001202371.1    Uniprot ID   A0A716I2X5
Organism   Salmonella enterica subsp. enterica serovar Typhi strain WGS1146     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1963665..1974270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFM56_RS10305 - 1964062..1965822 (-) 1761 WP_000156455.1 AAA family ATPase -
  FFM56_RS10310 matP 1966008..1966460 (+) 453 WP_000877174.1 macrodomain Ter protein MatP -
  FFM56_RS10315 ompA 1966532..1967584 (-) 1053 WP_010989142.1 porin OmpA -
  FFM56_RS10320 sulA 1967939..1968448 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  FFM56_RS10325 sxy/tfoX 1968665..1969270 (+) 606 WP_001202371.1 TfoX/Sxy family DNA transformation protein Regulator
  FFM56_RS10330 yccS 1969257..1971410 (-) 2154 WP_000950867.1 YccS family putative transporter -
  FFM56_RS10335 - 1971429..1971875 (-) 447 WP_001261222.1 YccF domain-containing protein -
  FFM56_RS10340 helD 1971999..1974053 (+) 2055 WP_000420526.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23175.88 Da        Isoelectric Point: 8.1288

>NTDB_id=365400 FFM56_RS10325 WP_001202371.1 1968665..1969270(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhi strain WGS1146]
MRALSYDRIYESQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=365400 FFM56_RS10325 WP_001202371.1 1968665..1969270(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhi strain WGS1146]
ATGAGAGCACTCTCTTATGACAGGATCTATGAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACTGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGTTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A716I2X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment