Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | HMPREF0868_RS07330 | Genome accession | NC_013895 |
| Coordinates | 1734256..1734957 (-) | Length | 233 a.a. |
| NCBI ID | WP_012994104.1 | Uniprot ID | - |
| Organism | Mageeibacillus indolicus UPII9-5 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1734256..1764350 | 1734256..1734957 | within | 0 |
Gene organization within MGE regions
Location: 1734256..1764350
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF0868_RS07330 (HMPREF0868_0175) | scnR | 1734256..1734957 (-) | 702 | WP_012994104.1 | response regulator transcription factor | Regulator |
| HMPREF0868_RS07335 (HMPREF0868_0174) | - | 1735098..1735862 (+) | 765 | WP_012994105.1 | ABC transporter ATP-binding protein | - |
| HMPREF0868_RS07340 (HMPREF0868_0173) | - | 1735859..1736584 (+) | 726 | WP_012994106.1 | ABC transporter permease | - |
| HMPREF0868_RS07345 (HMPREF0868_0172) | - | 1736598..1737362 (+) | 765 | WP_012994107.1 | ABC transporter permease | - |
| HMPREF0868_RS07350 (HMPREF0868_0171) | - | 1737473..1738684 (-) | 1212 | WP_012994108.1 | ATP-binding protein | - |
| HMPREF0868_RS07355 (HMPREF0868_0169) | - | 1739307..1739525 (-) | 219 | WP_012994110.1 | hypothetical protein | - |
| HMPREF0868_RS07360 (HMPREF0868_0168) | - | 1739518..1739853 (-) | 336 | WP_012994111.1 | hypothetical protein | - |
| HMPREF0868_RS07365 (HMPREF0868_0167) | - | 1739853..1740227 (-) | 375 | WP_012994112.1 | hypothetical protein | - |
| HMPREF0868_RS07370 (HMPREF0868_0166) | - | 1740227..1740613 (-) | 387 | WP_012994113.1 | hypothetical protein | - |
| HMPREF0868_RS07375 (HMPREF0868_0165) | - | 1740613..1740987 (-) | 375 | WP_041705729.1 | hypothetical protein | - |
| HMPREF0868_RS07380 | - | 1740968..1741345 (-) | 378 | WP_198300176.1 | EndoU domain-containing protein | - |
| HMPREF0868_RS07385 (HMPREF0868_0163) | - | 1741638..1742222 (-) | 585 | WP_012994116.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HMPREF0868_RS07390 (HMPREF0868_0162) | - | 1742215..1742565 (-) | 351 | WP_041705731.1 | helix-turn-helix domain-containing protein | - |
| HMPREF0868_RS07395 (HMPREF0868_0161) | - | 1742671..1742949 (+) | 279 | Protein_1425 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| HMPREF0868_RS07400 (HMPREF0868_0160) | - | 1743158..1743790 (-) | 633 | WP_012994119.1 | helix-turn-helix domain-containing protein | - |
| HMPREF0868_RS07405 (HMPREF0868_0159) | - | 1744107..1744556 (-) | 450 | WP_012994120.1 | hypothetical protein | - |
| HMPREF0868_RS07410 (HMPREF0868_0158) | - | 1744558..1744758 (-) | 201 | WP_012994121.1 | helix-turn-helix transcriptional regulator | - |
| HMPREF0868_RS07415 (HMPREF0868_0157) | - | 1745105..1745404 (-) | 300 | WP_012994122.1 | DUF3784 domain-containing protein | - |
| HMPREF0868_RS08820 (HMPREF0868_0156) | - | 1745428..1745649 (-) | 222 | Protein_1430 | TipAS antibiotic-recognition domain-containing protein | - |
| HMPREF0868_RS07425 (HMPREF0868_0155) | - | 1746135..1747871 (-) | 1737 | WP_012994124.1 | ABC transporter ATP-binding protein | - |
| HMPREF0868_RS07430 (HMPREF0868_0154) | - | 1747864..1749582 (-) | 1719 | WP_012994125.1 | ABC transporter ATP-binding protein | - |
| HMPREF0868_RS07435 (HMPREF0868_0153) | - | 1749656..1750246 (-) | 591 | WP_041705732.1 | TetR/AcrR family transcriptional regulator | - |
| HMPREF0868_RS07440 (HMPREF0868_0152) | - | 1750523..1750702 (-) | 180 | WP_012994127.1 | type I restriction-modification system subunit M N-terminal domain-containing protein | - |
| HMPREF0868_RS08760 | - | 1750824..1750910 (-) | 87 | WP_338037243.1 | hypothetical protein | - |
| HMPREF0868_RS07445 (HMPREF0868_0150) | - | 1751286..1752494 (-) | 1209 | WP_012994129.1 | ATP-binding protein | - |
| HMPREF0868_RS07450 (HMPREF0868_0149) | - | 1752716..1753309 (-) | 594 | WP_012994130.1 | DUF4097 family beta strand repeat-containing protein | - |
| HMPREF0868_RS07455 (HMPREF0868_0148) | - | 1753413..1753955 (-) | 543 | WP_049779020.1 | ATP-binding protein | - |
| HMPREF0868_RS07460 (HMPREF0868_0147) | - | 1754313..1757465 (-) | 3153 | WP_012994132.1 | AAA domain-containing protein | - |
| HMPREF0868_RS08580 | - | 1757764..1757844 (-) | 81 | Protein_1440 | sigma-70 family RNA polymerase sigma factor | - |
| HMPREF0868_RS07470 (HMPREF0868_0145) | - | 1758100..1758684 (-) | 585 | WP_012994134.1 | MptD family putative ECF transporter S component | - |
| HMPREF0868_RS07475 (HMPREF0868_0144) | - | 1758695..1759399 (-) | 705 | WP_012994135.1 | energy-coupling factor transporter transmembrane component T | - |
| HMPREF0868_RS07480 (HMPREF0868_0143) | - | 1759389..1760906 (-) | 1518 | WP_012994136.1 | ABC transporter ATP-binding protein | - |
| HMPREF0868_RS07485 (HMPREF0868_0142) | - | 1760909..1762618 (-) | 1710 | WP_012994137.1 | ABC transporter ATP-binding protein | - |
| HMPREF0868_RS07490 (HMPREF0868_0141) | - | 1762611..1764350 (-) | 1740 | WP_012994138.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26466.61 Da Isoelectric Point: 5.0030
>NTDB_id=36534 HMPREF0868_RS07330 WP_012994104.1 1734256..1734957(-) (scnR) [Mageeibacillus indolicus UPII9-5]
MNRNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIRDAVEATQKIRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEYDLLSALYRNAGCIVTIDALCEAAWGANPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE
MNRNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIRDAVEATQKIRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEYDLLSALYRNAGCIVTIDALCEAAWGANPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE
Nucleotide
Download Length: 702 bp
>NTDB_id=36534 HMPREF0868_RS07330 WP_012994104.1 1734256..1734957(-) (scnR) [Mageeibacillus indolicus UPII9-5]
ATGAATCGGAATGATTATTTATTGAACAAACATCTGCTGCTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAGAGATGCCGTAGAAGCAACACAAAAAATAC
GTCCGGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAACTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAGAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCGCTTACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTGACAATTGATGCACTGTGTGAAGCTGC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCTTTAGTAACAGTTAAAGGCTTAGGATATAAGCTCATTGTGGAGTAA
ATGAATCGGAATGATTATTTATTGAACAAACATCTGCTGCTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAGAGATGCCGTAGAAGCAACACAAAAAATAC
GTCCGGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAACTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAGAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCGCTTACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTGACAATTGATGCACTGTGTGAAGCTGC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCTTTAGTAACAGTTAAAGGCTTAGGATATAAGCTCATTGTGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
52.018 |
95.708 |
0.498 |