Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   FGA24_RS14505 Genome accession   NZ_CP040564
Coordinates   2910319..2910924 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 2905319..2915924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGA24_RS14490 (FGA24_14490) helD 2905536..2907590 (-) 2055 WP_000420505.1 DNA helicase IV -
  FGA24_RS14495 (FGA24_14495) - 2907714..2908160 (+) 447 WP_001261222.1 YccF domain-containing protein -
  FGA24_RS14500 (FGA24_14500) yccS 2908179..2910332 (+) 2154 WP_000950880.1 YccS family putative transporter -
  FGA24_RS14505 (FGA24_14505) sxy/tfoX 2910319..2910924 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  FGA24_RS14510 (FGA24_14510) sulA 2911141..2911650 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  FGA24_RS14515 (FGA24_14515) ompA 2912007..2913059 (+) 1053 WP_001674965.1 porin OmpA -
  FGA24_RS14520 (FGA24_14520) matP 2913131..2913583 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FGA24_RS14525 (FGA24_14525) - 2913769..2915529 (+) 1761 WP_000156453.1 AAA family ATPase -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=365290 FGA24_RS14505 WP_001202375.1 2910319..2910924(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=365290 FGA24_RS14505 WP_001202375.1 2910319..2910924(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751


Multiple sequence alignment