Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BV455_RS08275 Genome accession   NZ_CP040553
Coordinates   1615186..1616559 (-) Length   457 a.a.
NCBI ID   WP_017434044.1    Uniprot ID   A0A023DGL9
Organism   Saccharococcus caldoxylosilyticus strain ER4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1610186..1621559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV455_RS08255 (BV455_01675) gltX 1611211..1612671 (-) 1461 WP_042410139.1 glutamate--tRNA ligase -
  BV455_RS08260 (BV455_01676) ispF 1612776..1613252 (-) 477 WP_042410141.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BV455_RS08265 (BV455_01677) ispD 1613269..1613955 (-) 687 WP_042410144.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BV455_RS08270 (BV455_01678) - 1613979..1615073 (-) 1095 WP_042410146.1 PIN/TRAM domain-containing protein -
  BV455_RS08275 (BV455_01679) radA 1615186..1616559 (-) 1374 WP_017434044.1 DNA repair protein RadA Machinery gene
  BV455_RS08280 (BV455_01680) clpC 1616642..1619077 (-) 2436 WP_017434045.1 ATP-dependent protease ATP-binding subunit ClpC -
  BV455_RS08285 (BV455_01681) - 1619077..1620165 (-) 1089 WP_017434046.1 protein arginine kinase -
  BV455_RS08290 (BV455_01682) - 1620170..1620718 (-) 549 WP_017434047.1 UvrB/UvrC motif-containing protein -
  BV455_RS08295 (BV455_01683) - 1620733..1621194 (-) 462 WP_017434048.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49810.51 Da        Isoelectric Point: 7.5077

>NTDB_id=365151 BV455_RS08275 WP_017434044.1 1615186..1616559(-) (radA) [Saccharococcus caldoxylosilyticus strain ER4B]
MGKKKTKFVCQECGYESAKWLGRCPGCNTWNSLVEEIERVKPATRGVFVHSASDALAKPVPITTVTTTQEPRMQTNMSEF
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSAQLAAMQHKVLYISGEESIKQMKLRADRLHVVSDQLYVLAEADLEYIV
EAIENIHPACVVIDSIQTVYRADITSAPGSVAQVRECTAELMKIAKTKGIAVFIVGHVTKEGAIAGPRILEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMRDVGLAEVENPSEVFLEERSRGAAGSTVVAAMEGTRPVLVEIQALVSPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDQPTNPSDVIIGEVGLT
GEVRRVSRIEQRVQEAVKLGFSRIIIPKNNLTGWNPPKHITVIGVSHVSEALEHTLQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=365151 BV455_RS08275 WP_017434044.1 1615186..1616559(-) (radA) [Saccharococcus caldoxylosilyticus strain ER4B]
ATGGGGAAAAAGAAAACGAAATTTGTTTGTCAAGAATGCGGCTATGAATCAGCGAAATGGCTTGGAAGATGTCCGGGATG
CAACACTTGGAATTCGCTGGTCGAAGAAATAGAGCGAGTAAAGCCGGCAACAAGAGGAGTGTTTGTCCATTCTGCATCTG
ATGCCTTGGCTAAACCGGTGCCGATTACTACCGTAACGACCACGCAGGAGCCGCGCATGCAAACGAATATGTCCGAATTT
AACCGCGTATTAGGCGGAGGAATTGTAAAAGGTTCGCTCGTGTTAATCGGCGGGGATCCTGGTATTGGAAAGTCAACGCT
TTTGTTGCAAGTTTCTGCGCAGCTTGCTGCGATGCAGCATAAAGTATTGTATATATCAGGCGAAGAATCGATTAAGCAAA
TGAAGCTGCGCGCTGACCGCCTCCATGTGGTCTCCGATCAATTGTATGTGTTAGCGGAGGCAGATTTGGAATATATTGTA
GAAGCAATAGAAAATATTCACCCTGCTTGTGTGGTCATTGACTCTATTCAAACCGTGTATCGCGCTGATATTACATCTGC
TCCGGGAAGTGTGGCGCAAGTGCGCGAATGCACGGCAGAATTAATGAAAATCGCGAAAACGAAAGGAATCGCTGTTTTTA
TCGTCGGGCATGTGACGAAAGAGGGTGCCATTGCCGGTCCGCGAATTTTAGAGCATATGGTTGATACTGTTCTTTATTTC
GAAGGGGAGCGGCATCATACGTATCGCATTTTGCGGGCGGTAAAAAACCGGTTTGGTTCTACCAATGAAATTGGCATTTT
CGAAATGAGGGATGTAGGGCTTGCCGAAGTCGAAAATCCTTCAGAGGTGTTTTTGGAAGAACGCTCCCGCGGTGCGGCGG
GTTCAACGGTTGTCGCGGCGATGGAAGGAACTCGTCCTGTATTAGTCGAAATTCAAGCGTTAGTATCGCCAACGAGCTTT
GGCAATCCGCGGCGGATGGCAACCGGTATTGACCATAACCGTGTTTCTTTGTTGATGGCGGTATTAGAGAAGCGGGTAGG
TCTGCTTTTGCAAAATCAAGATGCCTATTTGAAAGTGGCAGGAGGAGTCAAATTGGATGAACCAGCGATTGATTTGGCGA
TCGCCGTCAGCATTGCCTCCAGCTTTCGCGACCAGCCGACGAATCCGTCTGATGTGATTATCGGCGAGGTCGGTTTAACC
GGGGAAGTGCGCCGCGTGTCCCGCATCGAACAGCGCGTGCAAGAGGCCGTCAAATTAGGCTTTTCTCGTATTATTATTCC
AAAAAACAACTTAACGGGCTGGAATCCTCCTAAGCATATAACGGTCATTGGTGTATCCCACGTTTCCGAGGCGCTCGAGC
ATACGTTGCAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A023DGL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.274

100

0.753
  radA Streptococcus mitis NCTC 12261

63.816

99.781

0.637
  radA Streptococcus mitis SK321

63.596

99.781

0.635
  radA Streptococcus pneumoniae Rx1

63.596

99.781

0.635
  radA Streptococcus pneumoniae D39

63.596

99.781

0.635
  radA Streptococcus pneumoniae R6

63.596

99.781

0.635
  radA Streptococcus pneumoniae TIGR4

63.596

99.781

0.635

Multiple sequence alignment