Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BV455_RS04800 Genome accession   NZ_CP040553
Coordinates   931703..933517 (-) Length   604 a.a.
NCBI ID   WP_017436308.1    Uniprot ID   -
Organism   Saccharococcus caldoxylosilyticus strain ER4B     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 926703..938517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV455_RS04765 (BV455_00971) - 927390..928028 (-) 639 WP_017436301.1 GTP pyrophosphokinase family protein -
  BV455_RS04770 (BV455_00972) - 928046..928420 (-) 375 WP_017436302.1 hypothetical protein -
  BV455_RS04775 (BV455_00973) - 928551..929138 (+) 588 WP_042411085.1 CYTH domain-containing protein -
  BV455_RS04780 (BV455_00974) - 929141..929725 (+) 585 WP_042411083.1 lytic transglycosylase domain-containing protein -
  BV455_RS04785 (BV455_00975) - 929866..930279 (+) 414 WP_017436305.1 globin -
  BV455_RS04790 (BV455_00976) spxH 930272..931165 (+) 894 WP_017436306.1 ClpXP adapter protein SpxH -
  BV455_RS04795 (BV455_00977) - 931483..931680 (+) 198 WP_017436307.1 hypothetical protein -
  BV455_RS04800 (BV455_00978) pepF 931703..933517 (-) 1815 WP_017436308.1 oligoendopeptidase F Regulator
  BV455_RS04805 (BV455_00979) - 933598..934848 (-) 1251 WP_409993896.1 competence protein CoiA -
  BV455_RS04810 (BV455_00980) cls 934948..936456 (-) 1509 WP_061579851.1 cardiolipin synthase -
  BV455_RS04815 (BV455_00981) mecA 936544..937230 (-) 687 WP_042411078.1 adaptor protein MecA -
  BV455_RS04820 (BV455_00982) - 937444..938112 (+) 669 WP_017436312.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70028.94 Da        Isoelectric Point: 4.8857

>NTDB_id=365141 BV455_RS04800 WP_017436308.1 931703..933517(-) (pepF) [Saccharococcus caldoxylosilyticus strain ER4B]
MEAKQTKKSLPSRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLAEYQGRLGESADVLYEALQYQDEVSMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILSIDEAKLRSFLEEKQELKLYEHALDEINRQRPHVLSAE
EEALLAQAAEVMQSSSSTFSMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYDTYEKYKNTFAST
LSGAVKKDNFFARVRRYKSAREAALSSNNIPESVYDNLIETVHEHLPLLHRYIRLRKKVLGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGEEYISIVKEGLENRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNEALLSDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHMIHMKAQ
EGEALTADSLTSLYYELNKKYFGDDIVVDQEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSTEPIRQACQVFAEKLEEMEKLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=365141 BV455_RS04800 WP_017436308.1 931703..933517(-) (pepF) [Saccharococcus caldoxylosilyticus strain ER4B]
ATGGAAGCGAAACAAACGAAAAAATCGCTGCCGTCACGCAGCGAAATTCCTGTTGAGGAAACGTGGCGTTTAGAGGATAT
TTTCCCGACGGACGAAGCGTGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATTCCGAAATTAGCGGAGTATCAAGGCC
GATTAGGAGAATCGGCGGATGTGCTGTACGAAGCGCTCCAATACCAGGACGAAGTGTCCATGCGCCTTGGCAAGCTGTAT
ACATATGCACATATGCGCTACGACCAAGATACAACAAACGCTTTTTACCAAGGTCTTAACGATCGAGCAACAAGCTTGTA
CAGCGAAGCGTCGAGCGCAATGGCGTTTATCGTTCCGGAAATTTTATCGATCGATGAGGCAAAATTGCGTTCGTTTTTAG
AAGAGAAACAAGAATTGAAACTGTATGAACATGCGTTAGACGAAATTAACCGCCAGCGTCCGCACGTGCTGTCGGCAGAG
GAAGAGGCGCTGCTTGCCCAAGCGGCAGAGGTGATGCAATCGTCTTCGTCTACTTTTAGCATGCTGAATAATGCCGATTT
AACGTTCCCGACGATTATTGACGAAAATGGCGAAGAAGTGGAAGTGACGCACGGCCGCTTTATCCGCTTTTTAGAAAGCA
CAGACCGACGCGTGCGCCGTGATGCGTTTAAAGCCGTGTACGATACGTATGAAAAATATAAAAATACGTTTGCCAGCACG
TTAAGCGGAGCGGTGAAAAAAGATAACTTCTTTGCGCGCGTCCGCCGCTACAAATCGGCACGGGAAGCGGCATTAAGCAG
CAACAATATTCCGGAAAGTGTCTACGATAATTTGATTGAAACGGTCCATGAGCATCTGCCGCTGTTGCACCGCTATATCC
GCCTGCGCAAAAAAGTGCTTGGACTTGATGAGCTTCATATGTATGATCTATACACGCCGCTTGTTCAAGACGTGAAAATG
GAAGTCACGTATGAAGAAGCGAAAGAGTACATGTTAAAAGGACTTGCTCCGCTCGGTGAAGAATATATTAGCATCGTCAA
AGAAGGTCTTGAAAATCGCTGGGTCGATGTGCGCGAAAATAAAGGAAAACGGAGCGGCGCCTATTCGTCAGGGGCATATG
GCACCCATCCGTATATTTTGCTAAACTGGCAGGATAACGTGAATAATTTATTTACGTTAGTTCACGAATTTGGCCACTCT
GTGCATAGTTATTACACACGCAAAACGCAGCCGTATCCATATGGAGATTATTCCATTTTTGTCGCTGAGGTCGCGTCGAC
ATGCAATGAAGCGCTGTTAAGTGATTATTTATTAAAAACGATCGACGATGAGAAAAAACGATTATATTTGCTTAACCATT
ATTTAGAGGGGTTCCGCGGAACGGTTTTTCGGCAAACGATGTTTGCTGAGTTTGAACATATGATCCATATGAAAGCGCAG
GAAGGAGAGGCGCTGACTGCTGATTCATTGACTTCTCTCTATTATGAATTAAATAAAAAATATTTTGGCGATGACATTGT
CGTTGATCAGGAAATTGGCTTAGAGTGGGCGCGCATTCCGCATTTTTATTACAATTATTATGTGTATCAATATGCCACGG
GTTTCAGCGCCGCGACGGCATTAAGCAAACAAATACTTGAAGAAGGAGAGCCGGCGGTGAAGCGCTATATTGAATTTTTG
AAGGCGGGAAGCTCCGATTATCCGATTGAAGTGTTGAAAAAAGCCGGGGTAGATATGACGAGCACGGAACCGATTCGTCA
AGCATGCCAAGTGTTTGCGGAGAAACTGGAGGAAATGGAAAAGCTGTTATCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.013

0.505

Multiple sequence alignment