Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FE838_RS01505 Genome accession   NZ_CP040530
Coordinates   306978..308345 (+) Length   455 a.a.
NCBI ID   WP_008764082.1    Uniprot ID   Q8A538
Organism   Bacteroides thetaiotaomicron strain DSM 2079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 301978..313345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE838_RS01495 (FE838_01565) - 304627..305664 (+) 1038 WP_074859600.1 asparaginase -
  FE838_RS01500 (FE838_01570) - 305766..306965 (+) 1200 WP_008763756.1 ATP-binding protein -
  FE838_RS01505 (FE838_01575) radA 306978..308345 (+) 1368 WP_008764082.1 DNA repair protein RadA Machinery gene
  FE838_RS01510 (FE838_01580) - 308366..310015 (+) 1650 WP_011108284.1 NAD(P)/FAD-dependent oxidoreductase -
  FE838_RS01515 (FE838_01585) - 310034..310636 (+) 603 WP_008763753.1 response regulator transcription factor -
  FE838_RS01520 (FE838_01590) - 310727..313144 (+) 2418 WP_162303106.1 TonB-dependent receptor -
  FE838_RS01525 (FE838_01595) - 313156..313281 (-) 126 Protein_266 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50082.69 Da        Isoelectric Point: 5.7668

>NTDB_id=365056 FE838_RS01505 WP_008764082.1 306978..308345(+) (radA) [Bacteroides thetaiotaomicron strain DSM 2079]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRPVSGIETQKAKPVILSEIEADDEPRINMHDDELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPDKKILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHI
KNTSPDLVIIDSIQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=365056 FE838_RS01505 WP_008764082.1 306978..308345(+) (radA) [Bacteroides thetaiotaomicron strain DSM 2079]
ATGGCAAAAGAAAAAACCGTATATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGTAAGTGTCCGTCGTG
CGGAGAATGGAATACGTATGTAGAAGAAATCGTACGGAAAGAAACGACCAACCGCCGTCCGGTATCGGGCATCGAGACGC
AGAAAGCGAAACCTGTTATCCTCAGCGAAATAGAAGCCGATGATGAGCCGCGCATCAATATGCACGACGACGAACTGAAT
CGTGTATTGGGCGGAGGACTTGTGCCCGGCTCTCTGGTTTTGATCGGCGGCGAACCGGGAATCGGAAAATCGACACTCGT
CATGCAGACTGTCTTGCGTATGCCGGACAAGAAGATTCTCTATGTATCCGGTGAAGAGAGCGCACGACAGCTGAAACTAC
GCGCCGACCGCCTTTCGGAAGTCTCCAGCGACTGTCTGATCGTTTGTGAGACTTCACTTGAACAGATTTACGTGCATATC
AAGAACACCAGTCCCGACCTGGTCATTATCGACTCCATACAGACTATTTCCACAGAAAATATAGAATCATCTCCCGGAAG
CATTGCCCAGGTAAGGGAATGTTCGGCATCGATTCTCCGTTTTGCCAAGGAAACGCATACGCCGGTCCTGCTAATCGGAC
ATATAAATAAAGAAGGCAGTATTGCAGGCCCAAAGGTACTGGAGCATATTGTAGATACAGTTCTCCAGTTTGAAGGAGAC
CAGCATTATATGTACCGTATTCTGCGAAGCATCAAGAACCGATTCGGAAGTACTGCCGAACTAGGTATTTACGAAATGCG
TCAGGACGGATTACGTCAGGTCAGCAATCCTTCGGAGTTGCTGTTAAGTCAGGATCATGAAGGGATGAGCGGAGTAGCGA
TTGCTTCTGCTATCGAGGGAGTACGCCCGTTCCTGATTGAGACACAGGCTTTGGTAAGTTCTGCCGTCTATGGAAATCCT
CAACGGTCGGCAACCGGCTTTGATATACGGAGAATGAATATGCTTCTGGCTGTCCTCGAAAAGCGCGTAGGCTTCAAGCT
TGCGCAGAAAGATGTGTTTCTGAATATTGCCGGAGGATTGAAGGTGAATGATCCGGCTATTGACCTGGCAGTGATCAGTG
CCATCCTTTCTTCCAATATGGATGCGGCTGTCGAACCGGAAGTCTGTATGGCAGGAGAAATCGGTCTGTCGGGAGAGATA
CGCCCCGTGAATCGAATAGAGCAGCGAATCGGAGAAGCGGAAAAGTTAGGATTCAAACGGTTCCTGCTTCCTAAGTATAA
TCTGCAAGGGATTGACACCCAAAAACTAAAAATAGAATTAGTACCTGTAAGAAAGGTAGAAGAGGCATTCAGAGCACTCT
TCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8A538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.092

100

0.514
  radA Streptococcus mitis SK321

48.132

100

0.481
  radA Streptococcus pneumoniae Rx1

48.132

100

0.481
  radA Streptococcus pneumoniae D39

48.132

100

0.481
  radA Streptococcus pneumoniae R6

48.132

100

0.481
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.481
  radA Streptococcus mitis NCTC 12261

48.132

100

0.481

Multiple sequence alignment