Detailed information NTG0365051

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: FC605_RS19260
• Genome accession: NZ_CP040528
• Coordinates: 3716390..3717535 (+)
• Length: 381 a.a.
• NCBI ID: WP_080529921.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PR10
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3711390..3722535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FC605_RS19235 (FC605_19235)	albF	3711406..3712686 (+)	1281	WP_003227558.1	pitrilysin family protein	-
FC605_RS19240 (FC605_19240)	albG	3712683..3713384 (+)	702	WP_080529918.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
FC605_RS19245 (FC605_19245)	ywhL	3713390..3714766 (-)	1377	WP_080529919.1	YncE family protein	-
FC605_RS19250 (FC605_19250)	ywhK	3714805..3716160 (-)	1356	WP_015250986.1	YncE family protein	-
FC605_RS21580 (FC605_19255)	-	3716157..3716387 (-)	231	WP_080529920.1	hypothetical protein	-
FC605_RS19260 (FC605_19260)	rapF	3716390..3717535 (+)	1146	WP_080529921.1	tetratricopeptide repeat protein	Regulator
FC605_RS19265 (FC605_19265)	-	3717519..3717638 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
FC605_RS19270 (FC605_19270)	-	3717753..3718203 (+)	451	Protein_3719	YbaK/EbsC family protein	-
FC605_RS19275 (FC605_19275)	speB	3718235..3719107 (-)	873	WP_003227545.1	agmatinase	-
FC605_RS19280 (FC605_19280)	speE	3719168..3719998 (-)	831	WP_003227543.1	spermidine synthase	-
FC605_RS19285 (FC605_19285)	pbpG	3720201..3722276 (+)	2076	WP_080529922.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45565.18 Da
• Isoelectric Point: 4.9877

>NTDB_id=365051 FC605_RS19260 WP_080529921.1 3716390..3717535(+) (rapF) [Bacillus subtilis strain PR10]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=365051 FC605_RS19260 WP_080529921.1 3716390..3717535(+) (rapF) [Bacillus subtilis strain PR10]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAACAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (263-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.315	100	0.803
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57