Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FC605_RS18165 Genome accession   NZ_CP040528
Coordinates   3509962..3510651 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PR10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3504962..3515651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS18130 (FC605_18130) flgN 3505143..3505625 (-) 483 WP_014481048.1 flagellar protein FlgN -
  FC605_RS18135 (FC605_18135) flgM 3505641..3505907 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  FC605_RS18140 (FC605_18140) yvyF 3505988..3506407 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  FC605_RS18145 (FC605_18145) comFC 3506480..3507202 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  FC605_RS18150 (FC605_18150) comFB 3507166..3507462 (-) 297 WP_015483764.1 late competence protein ComFB -
  FC605_RS18155 (FC605_18155) comFA 3507522..3508913 (-) 1392 WP_080529868.1 ATP-dependent helicase ComFA Machinery gene
  FC605_RS18160 (FC605_18160) fakBA 3509019..3509864 (-) 846 WP_003244125.1 DegV family protein -
  FC605_RS18165 (FC605_18165) degU 3509962..3510651 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FC605_RS18170 (FC605_18170) degS 3510734..3511891 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  FC605_RS18175 (FC605_18175) yvyE 3512108..3512761 (+) 654 WP_003227979.1 YigZ family protein -
  FC605_RS18180 (FC605_18180) tagV 3512761..3513936 (+) 1176 WP_038429732.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  FC605_RS18185 (FC605_18185) tagO 3514009..3515085 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=365046 FC605_RS18165 WP_003219701.1 3509962..3510651(-) (degU) [Bacillus subtilis strain PR10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=365046 FC605_RS18165 WP_003219701.1 3509962..3510651(-) (degU) [Bacillus subtilis strain PR10]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment