Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | FC605_RS13035 | Genome accession | NZ_CP040528 |
| Coordinates | 2527935..2528345 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain PR10 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2523301..2546768 | 2527935..2528345 | within | 0 |
Gene organization within MGE regions
Location: 2523301..2546768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FC605_RS13010 (FC605_13010) | yqeF | 2523468..2524199 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| FC605_RS13015 (FC605_13015) | cwlH | 2524451..2525203 (-) | 753 | WP_080529562.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| FC605_RS13020 (FC605_13020) | yqeD | 2525390..2526016 (+) | 627 | WP_080529563.1 | TVP38/TMEM64 family protein | - |
| FC605_RS13025 (FC605_13025) | gnd | 2526035..2526928 (-) | 894 | WP_038429331.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| FC605_RS13030 (FC605_13030) | yqeB | 2527180..2527902 (+) | 723 | WP_080529564.1 | hypothetical protein | - |
| FC605_RS13035 (FC605_13035) | nucA/comI | 2527935..2528345 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| FC605_RS13040 (FC605_13040) | - | 2528541..2528891 (+) | 351 | Protein_2512 | sigma-70 family RNA polymerase sigma factor | - |
| FC605_RS13045 (FC605_13045) | - | 2529031..2529501 (+) | 471 | WP_080529565.1 | MarR family transcriptional regulator | - |
| FC605_RS13050 (FC605_13050) | - | 2529653..2531065 (+) | 1413 | WP_080529566.1 | MDR family MFS transporter | - |
| FC605_RS13055 (FC605_13055) | spoIVCA | 2531252..2532712 (-) | 1461 | WP_250622053.1 | site-specific DNA recombinase SpoIVCA | - |
| FC605_RS21345 (FC605_13060) | - | 2532670..2532848 (-) | 179 | Protein_2516 | hypothetical protein | - |
| FC605_RS13065 (FC605_13065) | - | 2533515..2534612 (-) | 1098 | WP_080529568.1 | glycosyl hydrolase | - |
| FC605_RS13070 (FC605_13070) | - | 2535146..2535784 (-) | 639 | WP_080529569.1 | HD domain-containing protein | - |
| FC605_RS13075 (FC605_13075) | - | 2535869..2536492 (-) | 624 | WP_080529570.1 | FMN-binding negative transcriptional regulator | - |
| FC605_RS13080 (FC605_13080) | - | 2536518..2537036 (-) | 519 | WP_080529571.1 | GNAT family N-acetyltransferase | - |
| FC605_RS13085 (FC605_13085) | - | 2537055..2537510 (-) | 456 | WP_080529572.1 | MarR family transcriptional regulator | - |
| FC605_RS13090 (FC605_13090) | - | 2537625..2538272 (+) | 648 | WP_080529573.1 | YitT family protein | - |
| FC605_RS13095 (FC605_13095) | - | 2538379..2539179 (-) | 801 | WP_080529574.1 | dihydrodipicolinate synthase family protein | - |
| FC605_RS13100 (FC605_13100) | - | 2539329..2540708 (+) | 1380 | WP_080529575.1 | PLP-dependent aminotransferase family protein | - |
| FC605_RS13105 (FC605_13105) | - | 2541226..2542356 (-) | 1131 | WP_032726212.1 | hypothetical protein | - |
| FC605_RS13110 (FC605_13110) | - | 2542542..2544422 (+) | 1881 | WP_080529576.1 | T7SS effector LXG polymorphic toxin | - |
| FC605_RS13115 (FC605_13115) | - | 2544427..2544726 (+) | 300 | WP_080529577.1 | contact-dependent growth inhibition system immunity protein | - |
| FC605_RS13120 (FC605_13120) | cwlA | 2544765..2545583 (-) | 819 | WP_080529578.1 | N-acetylmuramoyl-L-alanine amidase | - |
| FC605_RS13125 (FC605_13125) | - | 2545628..2545768 (-) | 141 | Protein_2529 | phage holin family protein | - |
| FC605_RS13130 (FC605_13130) | - | 2545795..2545980 (-) | 186 | Protein_2530 | phage terminase large subunit | - |
| FC605_RS13135 (FC605_13135) | terS | 2545977..2546768 (-) | 792 | WP_080529579.1 | phage terminase small subunit | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=365030 FC605_RS13035 WP_009967785.1 2527935..2528345(-) (nucA/comI) [Bacillus subtilis strain PR10]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=365030 FC605_RS13035 WP_009967785.1 2527935..2528345(-) (nucA/comI) [Bacillus subtilis strain PR10]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |