Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   FC605_RS12250 Genome accession   NZ_CP040528
Coordinates   2394604..2395407 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PR10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2389604..2400407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS12225 (FC605_12225) glpQB 2390753..2391484 (-) 732 WP_080529528.1 glycerophosphodiester phosphodiesterase -
  FC605_RS12230 (FC605_12230) yqiI 2391563..2392183 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  FC605_RS12235 (FC605_12235) yqiH 2392198..2392491 (-) 294 WP_003230284.1 lipoprotein -
  FC605_RS12240 (FC605_12240) - 2392799..2392951 (+) 153 WP_014480226.1 hypothetical protein -
  FC605_RS12245 (FC605_12245) yqiG 2393024..2394142 (+) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  FC605_RS12250 (FC605_12250) spo0A 2394604..2395407 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  FC605_RS12255 (FC605_12255) spoIVB 2395683..2396963 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  FC605_RS12260 (FC605_12260) recN 2397138..2398868 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  FC605_RS12265 (FC605_12265) argR 2398905..2399354 (-) 450 WP_029317927.1 arginine repressor ArgR -
  FC605_RS12270 (FC605_12270) yqxC 2399452..2400297 (-) 846 WP_080529529.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=365015 FC605_RS12250 WP_003226427.1 2394604..2395407(-) (spo0A) [Bacillus subtilis strain PR10]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=365015 FC605_RS12250 WP_003226427.1 2394604..2395407(-) (spo0A) [Bacillus subtilis strain PR10]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATTTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATCGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment