Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   FC605_RS07870 Genome accession   NZ_CP040528
Coordinates   1494911..1495189 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain PR10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1489911..1500189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS07850 (FC605_07850) panEB 1491099..1492010 (+) 912 WP_080529275.1 ketopantoate reductase family protein -
  FC605_RS07855 (FC605_07855) ampS 1492044..1493276 (-) 1233 WP_003232341.1 aminopeptidase -
  FC605_RS07860 (FC605_07860) ykpC 1493385..1493519 (-) 135 WP_003238865.1 protein YkpC -
  FC605_RS07865 (FC605_07865) mreBH 1493620..1494627 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  FC605_RS07870 (FC605_07870) abrB 1494911..1495189 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  FC605_RS07875 (FC605_07875) kinC 1495379..1496665 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  FC605_RS07880 (FC605_07880) ykqA 1496681..1497514 (+) 834 WP_015252173.1 gamma-glutamylcyclotransferase -
  FC605_RS07885 (FC605_07885) ktrC 1497577..1498242 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  FC605_RS07890 (FC605_07890) ade 1498398..1500131 (+) 1734 WP_080529276.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=365009 FC605_RS07870 WP_003244728.1 1494911..1495189(+) (abrB) [Bacillus subtilis strain PR10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=365009 FC605_RS07870 WP_003244728.1 1494911..1495189(+) (abrB) [Bacillus subtilis strain PR10]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment