Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   FC605_RS05665 Genome accession   NZ_CP040528
Coordinates   1091708..1092286 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain PR10     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086708..1097286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS05645 (FC605_05645) hemAT 1087218..1088517 (-) 1300 Protein_1033 heme-based aerotactic transducer HemAT -
  FC605_RS05650 (FC605_05650) comW 1088656..1090185 (-) 1530 WP_080529144.1 FAD-dependent oxidoreductase -
  FC605_RS05655 (FC605_05655) yhxC 1090297..1091154 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  FC605_RS05660 (FC605_05660) yhzC 1091182..1091415 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  FC605_RS05665 (FC605_05665) comK 1091708..1092286 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  FC605_RS05670 (FC605_05670) yhxD 1092333..1093232 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  FC605_RS05675 (FC605_05675) yhjA 1093449..1093718 (+) 270 WP_080529145.1 excalibur calcium-binding domain-containing protein -
  FC605_RS05680 (FC605_05680) yhjB 1093762..1095231 (-) 1470 WP_080529146.1 sodium:solute symporter -
  FC605_RS05685 (FC605_05685) yhjC 1095228..1095428 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  FC605_RS05690 (FC605_05690) - 1095627..1095998 (-) 372 WP_014476361.1 hypothetical protein -
  FC605_RS05695 (FC605_05695) yhjE 1096150..1096773 (+) 624 WP_010886465.1 VTT domain-containing protein -
  FC605_RS05700 (FC605_05700) lepB 1096775..1097281 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=364995 FC605_RS05665 WP_003245329.1 1091708..1092286(+) (comK) [Bacillus subtilis strain PR10]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=364995 FC605_RS05665 WP_003245329.1 1091708..1092286(+) (comK) [Bacillus subtilis strain PR10]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACATAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACCGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment