Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ELJP9_RS19470 Genome accession   NZ_CP040527
Coordinates   4107645..4109078 (+) Length   477 a.a.
NCBI ID   WP_138014187.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4102645..4114078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELJP9_RS19440 (ELJP9_19440) - 4103211..4104189 (+) 979 Protein_3777 calcium/sodium antiporter -
  ELJP9_RS19445 (ELJP9_19445) kdsD 4104203..4105189 (+) 987 WP_020883527.1 arabinose-5-phosphate isomerase KdsD -
  ELJP9_RS19450 (ELJP9_19450) kdsC 4105204..4105770 (+) 567 WP_014171813.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ELJP9_RS19455 (ELJP9_19455) lptC 4105767..4106342 (+) 576 WP_014171814.1 LPS export ABC transporter periplasmic protein LptC -
  ELJP9_RS19460 (ELJP9_19460) lptA 4106311..4106865 (+) 555 WP_020883526.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ELJP9_RS19465 (ELJP9_19465) lptB 4106872..4107597 (+) 726 WP_014171816.1 LPS export ABC transporter ATP-binding protein -
  ELJP9_RS19470 (ELJP9_19470) rpoN/rpoN1 4107645..4109078 (+) 1434 WP_138014187.1 RNA polymerase factor sigma-54 Machinery gene
  ELJP9_RS19475 (ELJP9_19475) hpf 4109101..4109388 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  ELJP9_RS19480 (ELJP9_19480) ptsN 4109471..4109962 (+) 492 WP_014171819.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ELJP9_RS19485 (ELJP9_19485) rapZ 4110008..4110862 (+) 855 WP_014171820.1 RNase adapter RapZ -
  ELJP9_RS19490 (ELJP9_19490) npr 4110859..4111131 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  ELJP9_RS19495 (ELJP9_19495) mtgA 4111170..4111895 (-) 726 WP_138014188.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ELJP9_RS19500 (ELJP9_19500) elbB 4111892..4112545 (-) 654 WP_121339883.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54236.02 Da        Isoelectric Point: 4.3224

>NTDB_id=364971 ELJP9_RS19470 WP_138014187.1 4107645..4109078(+) (rpoN/rpoN1) [Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHEEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDETRLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTILSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=364971 ELJP9_RS19470 WP_138014187.1 4107645..4109078(+) (rpoN/rpoN1) [Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCGATTCGCCTGTTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAAGCGCTGGATAGCAATCCGTTGCTGGAGCAAGCCGATCTTCATG
AAGAGGTAGATACCCAGCAGTCGCAGGATACTGAAGCACTCGACACCGCCGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTTTATCAGGGTGAAACTACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCGACATCCATTGTCGATGCCGTGGATGACACCGGTTATCTGACCGTCACGCTGGACGAA
ATTCTGGAAAGCATGGGTGACGAAGAAATTGAACTCGAGGAGATAGAAGCCGTTCTGAAGCGCATTCAGCGTTTCGATCC
GGTTGGGGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTTATCCAACTTTCTCAGTTCAGCAAAGAGACACCATGGCTTG
ATGAAACCCGCTTGATCATCAGCGACCATCTGGATCTTCTGGCCAATCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTCAATCTGATTCAGTCCCTCGATCCGCGCCCCGGTCAGTCCATTCAGACCAG
CGAACCCGAGTACGTCATCCCGGATGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGATAATCAATACATTCGT
AGCAATTTGCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTCCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGTGAAGCGTCGTCAACGGCCATTCGCGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTGAGCGACAGTAAGTTAACCACCATACTGTCCGACCAGGGTATTATGGTGG
CACGCCGAACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.941

100

0.486

Multiple sequence alignment