Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ELJP9_RS07690 Genome accession   NZ_CP040527
Coordinates   1650938..1651564 (+) Length   208 a.a.
NCBI ID   WP_032677817.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645938..1656564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELJP9_RS07670 (ELJP9_07670) - 1646332..1648092 (-) 1761 WP_138013696.1 Lon protease family protein -
  ELJP9_RS07675 (ELJP9_07675) matP 1648279..1648731 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  ELJP9_RS07680 (ELJP9_07680) ompA 1648801..1649856 (-) 1056 WP_020884794.1 porin OmpA -
  ELJP9_RS07685 (ELJP9_07685) sulA 1650211..1650720 (-) 510 WP_078774793.1 SOS-induced cell division inhibitor SulA -
  ELJP9_RS07690 (ELJP9_07690) sxy/tfoX 1650938..1651564 (+) 627 WP_032677817.1 TfoX/Sxy family DNA transformation protein Regulator
  ELJP9_RS07695 (ELJP9_07695) yccS 1651521..1653683 (-) 2163 WP_020884791.1 YccS family putative transporter -
  ELJP9_RS07700 (ELJP9_07700) - 1653703..1654149 (-) 447 WP_025204535.1 YccF domain-containing protein -
  ELJP9_RS07705 (ELJP9_07705) helD 1654273..1656327 (+) 2055 WP_138013697.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23863.40 Da        Isoelectric Point: 9.4993

>NTDB_id=364960 ELJP9_RS07690 WP_032677817.1 1650938..1651564(+) (sxy/tfoX) [Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITNEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=364960 ELJP9_RS07690 WP_032677817.1 1650938..1651564(+) (sxy/tfoX) [Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGCG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTAATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572

Multiple sequence alignment