Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   SLGD_RS01655 Genome accession   NC_013893
Coordinates   358095..359003 (+) Length   302 a.a.
NCBI ID   WP_002478513.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis HKU09-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 353095..364003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLGD_RS01635 (SLGD_00338) wecB 354112..355251 (+) 1140 WP_002478510.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  SLGD_RS01640 (SLGD_00339) - 355437..356885 (-) 1449 WP_002478511.1 alkaline phosphatase -
  SLGD_RS13510 - 357104..357208 (+) 105 Protein_331 hypothetical protein -
  SLGD_RS01650 (SLGD_00341) braR 357424..358089 (+) 666 WP_002460617.1 response regulator transcription factor Regulator
  SLGD_RS01655 (SLGD_00342) braS 358095..359003 (+) 909 WP_002478513.1 sensor histidine kinase Regulator
  SLGD_RS01660 (SLGD_00343) - 359109..359858 (+) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  SLGD_RS01665 (SLGD_00344) - 359881..361842 (+) 1962 WP_225306504.1 FtsX-like permease family protein -
  SLGD_RS01670 (SLGD_00345) - 361884..362333 (+) 450 WP_002478516.1 DUF4064 domain-containing protein -
  SLGD_RS01675 (SLGD_00346) - 362420..362899 (+) 480 WP_002478517.1 DUF4064 domain-containing protein -
  SLGD_RS01680 (SLGD_00347) - 363172..363768 (+) 597 WP_012990693.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 35307.95 Da        Isoelectric Point: 7.1983

>NTDB_id=36489 SLGD_RS01655 WP_002478513.1 358095..359003(+) (braS) [Staphylococcus lugdunensis HKU09-01]
MTMFFDTIKRELIITAMALVVFLVIFFVFNLPYYAYFLGSGIMLFIMVIYWFIALSEFKKQQRLTSQLKVLEQEVQQLKS
KQTQYQNDIESYFLTWVHQIKTPITASKLLLERNEDNVVNRVRQEIIQIDNYTSLALSYLKLMNHETDMSFTKVTVNELV
KPLIMKYSIQFIDQHTRIHYDRSDEEVLTDVQWASIMIEQILNNALKYARGKDIWLTFDKDINVLSIKDNGVGISTADLP
KIFDKGYSGYNGRLNEQSTGIGLFIVKHISNHIHHQVEVDSKLGQGTTFKIYFPKVDKMNEL

Nucleotide


Download         Length: 909 bp        

>NTDB_id=36489 SLGD_RS01655 WP_002478513.1 358095..359003(+) (braS) [Staphylococcus lugdunensis HKU09-01]
ATGACAATGTTCTTTGACACAATTAAGCGTGAACTGATCATCACCGCAATGGCATTAGTTGTTTTTTTAGTAATCTTTTT
TGTCTTTAATTTGCCCTACTATGCCTACTTTTTAGGAAGTGGCATTATGTTATTTATCATGGTTATTTATTGGTTTATCG
CATTGAGCGAGTTTAAAAAGCAACAACGATTGACATCTCAACTTAAAGTGTTAGAACAAGAAGTTCAACAATTAAAAAGC
AAGCAAACGCAATACCAAAATGACATCGAAAGCTATTTTCTTACTTGGGTACATCAAATTAAAACACCGATCACTGCCTC
CAAACTATTACTCGAACGTAATGAAGACAATGTTGTTAACCGTGTCCGACAAGAAATAATTCAAATTGATAATTACACTA
GTTTAGCTTTAAGCTATTTAAAATTAATGAATCATGAAACTGACATGAGCTTTACTAAAGTAACTGTCAATGAATTGGTT
AAGCCATTAATAATGAAATATTCAATACAATTTATCGATCAACATACACGTATACATTATGATCGCTCAGATGAAGAAGT
ATTGACAGATGTGCAATGGGCTTCCATTATGATAGAGCAAATTTTGAATAATGCACTAAAATATGCTCGTGGTAAAGATA
TTTGGTTAACTTTTGATAAAGATATAAACGTACTGTCTATCAAAGATAATGGTGTGGGTATTAGTACTGCTGATTTACCG
AAAATTTTTGATAAAGGTTATTCTGGTTATAATGGTCGTTTAAATGAGCAATCAACTGGTATTGGATTGTTTATAGTAAA
ACATATATCGAATCATATTCATCATCAAGTAGAAGTAGATTCTAAGCTAGGTCAAGGTACGACATTTAAGATTTATTTTC
CTAAGGTAGATAAAATGAATGAACTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(196-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

59.107

96.358

0.57

Multiple sequence alignment