Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BCPR1_RS20820 Genome accession   NZ_CP040515
Coordinates   4001805..4002128 (+) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PR1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3996805..4007128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS20805 (BCPR1_20805) - 3997317..3998684 (-) 1368 WP_138322288.1 aldehyde dehydrogenase -
  BCPR1_RS20810 (BCPR1_20810) inhA1 3998857..4001247 (-) 2391 WP_001035921.1 M6 family metalloprotease immune inhibitor InhA1 -
  BCPR1_RS20815 (BCPR1_20815) - 4001591..4001725 (+) 135 WP_000276215.1 anti-repressor SinI family protein -
  BCPR1_RS20820 (BCPR1_20820) sinR 4001805..4002128 (+) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  BCPR1_RS20825 (BCPR1_20825) calY 4002210..4002803 (-) 594 WP_000053733.1 biofilm matrix protein CalY -
  BCPR1_RS20830 (BCPR1_20830) - 4003236..4004060 (-) 825 WP_138322289.1 DUF4047 domain-containing protein -
  BCPR1_RS20835 (BCPR1_20835) - 4004222..4004809 (-) 588 WP_000172840.1 CalY family protein -
  BCPR1_RS20840 (BCPR1_20840) - 4004872..4005441 (-) 570 WP_000767806.1 signal peptidase I -
  BCPR1_RS20845 (BCPR1_20845) - 4005634..4006920 (-) 1287 WP_000247649.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=364878 BCPR1_RS20820 WP_000578882.1 4001805..4002128(+) (sinR) [Bacillus paranthracis strain PR1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=364878 BCPR1_RS20820 WP_000578882.1 4001805..4002128(+) (sinR) [Bacillus paranthracis strain PR1]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment