Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BCPR1_RS19465 Genome accession   NZ_CP040515
Coordinates   3750798..3751400 (+) Length   200 a.a.
NCBI ID   WP_000155590.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PR1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3745798..3756400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS19425 (BCPR1_19425) gpsB 3746191..3746529 (-) 339 WP_000622430.1 cell division regulator GpsB -
  BCPR1_RS19430 (BCPR1_19430) - 3746627..3747181 (-) 555 WP_000862920.1 DUF1273 domain-containing protein -
  BCPR1_RS19435 (BCPR1_19435) - 3747238..3747660 (-) 423 WP_000546264.1 CotD family spore coat protein -
  BCPR1_RS19440 (BCPR1_19440) - 3747816..3748286 (-) 471 WP_000487707.1 YppG family protein -
  BCPR1_RS19445 (BCPR1_19445) - 3748464..3748655 (+) 192 WP_000242664.1 YppF family protein -
  BCPR1_RS19450 (BCPR1_19450) - 3748681..3749025 (-) 345 WP_000872959.1 YppE family protein -
  BCPR1_RS19455 (BCPR1_19455) - 3749041..3749283 (-) 243 WP_001252039.1 hypothetical protein -
  BCPR1_RS27905 - 3749369..3749545 (+) 177 WP_001982922.1 hypothetical protein -
  BCPR1_RS19460 (BCPR1_19460) - 3749669..3750694 (-) 1026 WP_014481621.1 DUF2515 domain-containing protein -
  BCPR1_RS19465 (BCPR1_19465) recU 3750798..3751400 (+) 603 WP_000155590.1 Holliday junction resolvase RecU Machinery gene
  BCPR1_RS19470 (BCPR1_19470) - 3751466..3754162 (+) 2697 WP_001283129.1 PBP1A family penicillin-binding protein -
  BCPR1_RS19475 (BCPR1_19475) - 3754187..3754705 (-) 519 WP_000442681.1 YpoC family protein -
  BCPR1_RS19480 (BCPR1_19480) nth 3754709..3755356 (-) 648 WP_000933023.1 endonuclease III -
  BCPR1_RS19485 (BCPR1_19485) dnaD 3755372..3756079 (-) 708 WP_000728538.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23356.64 Da        Isoelectric Point: 9.4277

>NTDB_id=364876 BCPR1_RS19465 WP_000155590.1 3750798..3751400(+) (recU) [Bacillus paranthracis strain PR1]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQIIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=364876 BCPR1_RS19465 WP_000155590.1 3750798..3751400(+) (recU) [Bacillus paranthracis strain PR1]
ATGACCATTCGTTACCCAAATGGAAAACGATACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACCCCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAATAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment