Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BCPR1_RS17630 Genome accession   NZ_CP040515
Coordinates   3385648..3385935 (-) Length   95 a.a.
NCBI ID   WP_000648332.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PR1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3380648..3390935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS17610 (BCPR1_17610) - 3380925..3381786 (+) 862 Protein_3452 AraC family transcriptional regulator -
  BCPR1_RS17615 (BCPR1_17615) - 3381856..3382719 (+) 864 WP_000615932.1 helix-turn-helix domain-containing protein -
  BCPR1_RS17620 (BCPR1_17620) ugpC 3382956..3384059 (+) 1104 WP_000829436.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  BCPR1_RS17625 (BCPR1_17625) - 3384414..3385373 (-) 960 WP_001089037.1 serine protease -
  BCPR1_RS17630 (BCPR1_17630) abrB 3385648..3385935 (-) 288 WP_000648332.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BCPR1_RS17635 (BCPR1_17635) - 3386052..3387932 (-) 1881 WP_138322130.1 ABC transporter permease -
  BCPR1_RS17640 (BCPR1_17640) nadE 3388204..3389022 (+) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  BCPR1_RS17645 (BCPR1_17645) - 3389071..3389532 (-) 462 WP_000035004.1 NUDIX hydrolase -
  BCPR1_RS17650 (BCPR1_17650) - 3389564..3389761 (-) 198 WP_138322131.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10545.28 Da        Isoelectric Point: 7.9588

>NTDB_id=364875 BCPR1_RS17630 WP_000648332.1 3385648..3385935(-) (abrB) [Bacillus paranthracis strain PR1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSGA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=364875 BCPR1_RS17630 WP_000648332.1 3385648..3385935(-) (abrB) [Bacillus paranthracis strain PR1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGGGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment