Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BCPR1_RS06900 Genome accession   NZ_CP040515
Coordinates   1312969..1314708 (+) Length   579 a.a.
NCBI ID   WP_000947749.1    Uniprot ID   A0A1J9YIX3
Organism   Bacillus paranthracis strain PR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307969..1319708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS06880 (BCPR1_06880) ispA 1308182..1309072 (+) 891 WP_138321115.1 (2E,6E)-farnesyl diphosphate synthase -
  BCPR1_RS06885 (BCPR1_06885) dxs 1309375..1311267 (+) 1893 WP_000366458.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BCPR1_RS06890 (BCPR1_06890) - 1311271..1312110 (+) 840 WP_001274741.1 TlyA family RNA methyltransferase -
  BCPR1_RS06895 (BCPR1_06895) argR 1312253..1312702 (+) 450 WP_001032581.1 arginine repressor ArgR -
  BCPR1_RS06900 (BCPR1_06900) recN 1312969..1314708 (+) 1740 WP_000947749.1 DNA repair protein RecN Machinery gene
  BCPR1_RS06905 (BCPR1_06905) spoIVB 1314827..1316125 (+) 1299 WP_002028467.1 SpoIVB peptidase -
  BCPR1_RS06915 (BCPR1_06915) spo0A 1316413..1317207 (+) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  BCPR1_RS06920 (BCPR1_06920) - 1317784..1319070 (+) 1287 WP_044793827.1 WXG100 family type VII secretion target -
  BCPR1_RS06925 (BCPR1_06925) - 1319107..1319676 (+) 570 WP_000707099.1 DUF1629 domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65775.82 Da        Isoelectric Point: 4.8260

>NTDB_id=364865 BCPR1_RS06900 WP_000947749.1 1312969..1314708(+) (recN) [Bacillus paranthracis strain PR1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKIDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=364865 BCPR1_RS06900 WP_000947749.1 1312969..1314708(+) (recN) [Bacillus paranthracis strain PR1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATAGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGGGATGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCCTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAACGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGGCTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCGAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCAGTTATTTTTGATGAGGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment