Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BCPR1_RS06305 Genome accession   NZ_CP040515
Coordinates   1212503..1213249 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus paranthracis strain PR1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1207503..1218249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS06275 (BCPR1_06275) - 1207792..1209936 (+) 2145 WP_000946450.1 HD family phosphohydrolase -
  BCPR1_RS06280 (BCPR1_06280) ybeY 1209933..1210403 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  BCPR1_RS06285 (BCPR1_06285) - 1210400..1210753 (+) 354 WP_044793784.1 diacylglycerol kinase family protein -
  BCPR1_RS06290 (BCPR1_06290) - 1210853..1211251 (+) 399 WP_001014347.1 cytidine deaminase -
  BCPR1_RS06295 (BCPR1_06295) era 1211244..1212149 (+) 906 WP_001080241.1 GTPase Era -
  BCPR1_RS06300 (BCPR1_06300) - 1212326..1212469 (+) 144 WP_000883924.1 YqzL family protein -
  BCPR1_RS06305 (BCPR1_06305) recO 1212503..1213249 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  BCPR1_RS06310 (BCPR1_06310) - 1213357..1213989 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  BCPR1_RS06315 (BCPR1_06315) - 1214019..1214831 (+) 813 WP_000368942.1 pyruvate, water dikinase regulatory protein -
  BCPR1_RS28110 - 1214879..1215010 (+) 132 WP_001110543.1 hypothetical protein -
  BCPR1_RS06320 (BCPR1_06320) dnaG 1215683..1217479 (+) 1797 WP_000528216.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=364863 BCPR1_RS06305 WP_000487010.1 1212503..1213249(+) (recO) [Bacillus paranthracis strain PR1]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=364863 BCPR1_RS06305 WP_000487010.1 1212503..1213249(+) (recO) [Bacillus paranthracis strain PR1]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment