Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BCPR1_RS01580 Genome accession   NZ_CP040515
Coordinates   329271..330620 (+) Length   449 a.a.
NCBI ID   WP_138320743.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PR1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324271..335620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS01560 (BCPR1_01560) - 325374..326009 (-) 636 WP_000926682.1 YigZ family protein -
  BCPR1_RS01565 (BCPR1_01565) - 326249..327091 (+) 843 WP_000844764.1 DegV family protein -
  BCPR1_RS01570 (BCPR1_01570) - 327265..327579 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  BCPR1_RS01575 (BCPR1_01575) - 327728..329143 (+) 1416 WP_041184270.1 C40 family peptidase -
  BCPR1_RS01580 (BCPR1_01580) comFA 329271..330620 (+) 1350 WP_138320743.1 ATP-dependent helicase ComFA Machinery gene
  BCPR1_RS01585 (BCPR1_01585) - 330620..331324 (+) 705 WP_044822599.1 amidophosphoribosyltransferase -
  BCPR1_RS01590 (BCPR1_01590) cspC 331451..331648 (+) 198 WP_001162041.1 cold shock protein CspC -
  BCPR1_RS01595 (BCPR1_01595) raiA 331972..332514 (+) 543 WP_000671192.1 ribosome-associated translation inhibitor RaiA -
  BCPR1_RS01600 (BCPR1_01600) - 332923..333405 (+) 483 WP_000023378.1 hypothetical protein -
  BCPR1_RS01605 (BCPR1_01605) - 333523..334092 (+) 570 WP_000691998.1 hypothetical protein -
  BCPR1_RS01610 (BCPR1_01610) - 334124..334912 (+) 789 WP_000120066.1 hypothetical protein -
  BCPR1_RS01615 (BCPR1_01615) - 334899..335594 (+) 696 WP_044792034.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51098.62 Da        Isoelectric Point: 9.8568

>NTDB_id=364853 BCPR1_RS01580 WP_138320743.1 329271..330620(+) (comFA) [Bacillus paranthracis strain PR1]
MLAGKQLLLEELSSDLRRELSDLKKKGEVVCVQGITKNTSKYICQRCGNIEKRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRERNPLQWNGALSIGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHRKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=364853 BCPR1_RS01580 WP_138320743.1 329271..330620(+) (comFA) [Bacillus paranthracis strain PR1]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACAAAGAATACTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGAAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGC
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAACGGAGACAGGGAGCGAAATCCATTACAGTGGAATGGGGCTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTCCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACTGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCAGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAGAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAATAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(110-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.392

93.096

0.488
  comFA Latilactobacillus sakei subsp. sakei 23K

40.098

91.091

0.365

Multiple sequence alignment