Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BPGQ101_RS10710 Genome accession   NZ_CP040514
Coordinates   2086929..2087564 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain GQYP101     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2081929..2092564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS10670 (BPGQ101_10675) - 2082090..2083208 (+) 1119 WP_234879644.1 NADH-dependent flavin oxidoreductase -
  BPGQ101_RS10675 (BPGQ101_10680) - 2083258..2083764 (-) 507 WP_008344623.1 PTS sugar transporter subunit IIA -
  BPGQ101_RS10680 (BPGQ101_10685) - 2083933..2084352 (+) 420 WP_138278665.1 Hsp20/alpha crystallin family protein -
  BPGQ101_RS10685 (BPGQ101_10690) - 2084374..2084829 (-) 456 WP_138278666.1 YppG family protein -
  BPGQ101_RS10690 (BPGQ101_10695) - 2084938..2085318 (-) 381 WP_234879645.1 YppE family protein -
  BPGQ101_RS10695 (BPGQ101_10700) - 2085368..2085601 (-) 234 WP_224558417.1 DUF5446 family protein -
  BPGQ101_RS10700 (BPGQ101_10705) sspM 2085798..2085902 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  BPGQ101_RS10705 (BPGQ101_10710) - 2085926..2086882 (-) 957 WP_047945924.1 DUF2515 domain-containing protein -
  BPGQ101_RS10710 (BPGQ101_10715) recU 2086929..2087564 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  BPGQ101_RS10715 (BPGQ101_10720) - 2087584..2090271 (+) 2688 WP_138278668.1 PBP1A family penicillin-binding protein -
  BPGQ101_RS10720 (BPGQ101_10725) - 2090307..2090816 (-) 510 WP_138278669.1 YpoC family protein -
  BPGQ101_RS10725 (BPGQ101_10730) nth 2090813..2091475 (-) 663 WP_138278670.1 endonuclease III -
  BPGQ101_RS10730 (BPGQ101_10735) - 2091493..2092197 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=364818 BPGQ101_RS10710 WP_017359733.1 2086929..2087564(+) (recU) [Bacillus altitudinis strain GQYP101]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=364818 BPGQ101_RS10710 WP_017359733.1 2086929..2087564(+) (recU) [Bacillus altitudinis strain GQYP101]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACACTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment