Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BPGQ101_RS09300 Genome accession   NZ_CP040514
Coordinates   1806549..1806929 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1801549..1811929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS09290 (BPGQ101_09295) - 1803272..1804180 (+) 909 WP_008343827.1 trypsin-like serine peptidase -
  BPGQ101_RS09295 (BPGQ101_09300) - 1804327..1806321 (+) 1995 WP_138278560.1 glycosyltransferase family 39 protein -
  BPGQ101_RS09300 (BPGQ101_09305) nucA/comI 1806549..1806929 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BPGQ101_RS09305 (BPGQ101_09310) - 1807072..1807920 (+) 849 WP_138278561.1 STAS domain-containing protein -
  BPGQ101_RS09310 (BPGQ101_09315) - 1807953..1808495 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  BPGQ101_RS09315 (BPGQ101_09320) - 1808792..1809229 (+) 438 WP_057079489.1 hypothetical protein -
  BPGQ101_RS09320 (BPGQ101_09325) lexA 1809277..1809897 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  BPGQ101_RS09325 (BPGQ101_09330) yneA 1810057..1810368 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  BPGQ101_RS09330 (BPGQ101_09335) - 1810386..1811033 (+) 648 WP_017359583.1 YneB family resolvase-like protein -
  BPGQ101_RS09335 (BPGQ101_09340) - 1811103..1811333 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=364817 BPGQ101_RS09300 WP_224559893.1 1806549..1806929(+) (nucA/comI) [Bacillus altitudinis strain GQYP101]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=364817 BPGQ101_RS09300 WP_224559893.1 1806549..1806929(+) (nucA/comI) [Bacillus altitudinis strain GQYP101]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment