Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BPGQ101_RS07585 Genome accession   NZ_CP040514
Coordinates   1459021..1459299 (+) Length   92 a.a.
NCBI ID   WP_138278471.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1454021..1464299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS07565 (BPGQ101_07570) - 1454112..1454387 (-) 276 WP_024719551.1 hypothetical protein -
  BPGQ101_RS07570 (BPGQ101_07575) - 1454532..1456151 (+) 1620 WP_007498620.1 ABC-F family ATP-binding cassette domain-containing protein -
  BPGQ101_RS07575 (BPGQ101_07580) - 1456192..1457424 (-) 1233 WP_046527027.1 aminopeptidase -
  BPGQ101_RS20210 - 1457531..1457662 (-) 132 WP_003210922.1 protein YkpC -
  BPGQ101_RS07580 (BPGQ101_07585) mreBH 1457737..1458744 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  BPGQ101_RS07585 (BPGQ101_07590) abrB 1459021..1459299 (+) 279 WP_138278471.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BPGQ101_RS07590 (BPGQ101_07595) - 1459444..1460733 (+) 1290 WP_017359399.1 ATP-binding protein -
  BPGQ101_RS07595 (BPGQ101_07600) - 1460761..1461603 (+) 843 WP_138278472.1 gamma-glutamylcyclotransferase -
  BPGQ101_RS07600 (BPGQ101_07605) - 1461641..1462309 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10334.03 Da        Isoelectric Point: 4.6909

>NTDB_id=364812 BPGQ101_RS07585 WP_138278471.1 1459021..1459299(+) (abrB) [Bacillus altitudinis strain GQYP101]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYRPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=364812 BPGQ101_RS07585 WP_138278471.1 1459021..1459299(+) (abrB) [Bacillus altitudinis strain GQYP101]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATAGTCTTGAAAAAATATCGGCCAGAGGGCGTAT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment