Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BPGQ101_RS02405 Genome accession   NZ_CP040514
Coordinates   423726..424154 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain GQYP101     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 418726..429154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS02375 (BPGQ101_02380) - 418871..419200 (+) 330 WP_017366586.1 YckD family protein -
  BPGQ101_RS02380 (BPGQ101_02385) - 419247..420011 (-) 765 WP_058336345.1 MBL fold metallo-hydrolase -
  BPGQ101_RS02385 (BPGQ101_02390) - 420127..420546 (+) 420 WP_208755861.1 Lrp/AsnC family transcriptional regulator -
  BPGQ101_RS02390 (BPGQ101_02395) - 420571..421377 (+) 807 WP_138278080.1 aminoglycoside N(3)-acetyltransferase -
  BPGQ101_RS02395 (BPGQ101_02400) comJ 421379..421765 (-) 387 WP_039166300.1 competence protein ComJ -
  BPGQ101_RS02400 (BPGQ101_02405) - 421902..423599 (-) 1698 WP_138278081.1 methyl-accepting chemotaxis protein -
  BPGQ101_RS02405 (BPGQ101_02410) nucA/comI 423726..424154 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BPGQ101_RS02410 (BPGQ101_02415) - 424523..426592 (+) 2070 WP_138278082.1 hydantoinase/oxoprolinase family protein -
  BPGQ101_RS02415 (BPGQ101_02420) - 426582..428567 (+) 1986 WP_138278083.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=364791 BPGQ101_RS02405 WP_007498233.1 423726..424154(-) (nucA/comI) [Bacillus altitudinis strain GQYP101]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=364791 BPGQ101_RS02405 WP_007498233.1 423726..424154(-) (nucA/comI) [Bacillus altitudinis strain GQYP101]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment