Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FFA29_RS03965 Genome accession   NZ_CP040507
Coordinates   789125..790975 (-) Length   616 a.a.
NCBI ID   WP_004510855.1    Uniprot ID   -
Organism   Aliarcobacter butzleri JV22     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784125..795975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA29_RS03950 - 784537..785664 (+) 1128 WP_004510852.1 iron-containing alcohol dehydrogenase -
  FFA29_RS03955 - 785714..787975 (-) 2262 WP_004510853.1 methyl-accepting chemotaxis protein -
  FFA29_RS03960 - 788100..789122 (-) 1023 WP_004510854.1 alanine racemase -
  FFA29_RS03965 uvrC 789125..790975 (-) 1851 WP_004510855.1 excinuclease ABC subunit UvrC Machinery gene
  FFA29_RS03970 - 791132..793522 (+) 2391 WP_138625972.1 methyl-accepting chemotaxis protein -
  FFA29_RS11670 - 793877..794350 (+) 474 Protein_780 MCP four helix bundle domain-containing protein -
  FFA29_RS11675 - 795140..795880 (+) 741 WP_409333419.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72299.41 Da        Isoelectric Point: 9.0433

>NTDB_id=364739 FFA29_RS03965 WP_004510855.1 789125..790975(-) (uvrC) [Aliarcobacter butzleri JV22]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLRNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNESLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=364739 FFA29_RS03965 WP_004510855.1 789125..790975(-) (uvrC) [Aliarcobacter butzleri JV22]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAGAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAGTGGATTGTTGTACCAAATGAGCATGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGGATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAAGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTATATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATACAAATAATAAAAAAGCTGTAATCGT
AAGAATGTTTTTAAGAGATGGTAAATTGACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAATAAAAAAATTAAACTAAT
AAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAATTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGCTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAGTTTAAATACTTTTGATAAAAA
AGCTTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAGAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAGATTGATGCGAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.741

97.89

0.506

Multiple sequence alignment