Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FFA26_RS08690 Genome accession   NZ_CP040500
Coordinates   1755263..1757074 (+) Length   603 a.a.
NCBI ID   WP_003649968.1    Uniprot ID   A0AA87A766
Organism   Lactobacillus paragasseri JV-V03     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750263..1762074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA26_RS08665 - 1750625..1751407 (-) 783 WP_003649974.1 threonine/serine exporter family protein -
  FFA26_RS08670 - 1751430..1752977 (-) 1548 WP_003649973.1 ABC-F family ATP-binding cassette domain-containing protein -
  FFA26_RS08675 - 1752986..1753378 (-) 393 WP_003649972.1 hypothetical protein -
  FFA26_RS08680 - 1753601..1753870 (+) 270 WP_020807069.1 hypothetical protein -
  FFA26_RS08685 - 1753975..1755099 (-) 1125 WP_003649969.1 LCP family protein -
  FFA26_RS08690 pepF 1755263..1757074 (+) 1812 WP_003649968.1 oligoendopeptidase F Regulator
  FFA26_RS08695 - 1757133..1758005 (-) 873 WP_138665931.1 Rpn family recombination-promoting nuclease/putative transposase -
  FFA26_RS08700 - 1758150..1759661 (-) 1512 WP_035430270.1 L-lactate permease -
  FFA26_RS08705 - 1759780..1760571 (-) 792 WP_003649965.1 metal ABC transporter permease -
  FFA26_RS08710 - 1760571..1761230 (-) 660 WP_003649964.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69010.91 Da        Isoelectric Point: 4.6810

>NTDB_id=364714 FFA26_RS08690 WP_003649968.1 1755263..1757074(+) (pepF) [Lactobacillus paragasseri JV-V03]
MALPTRNEVSDDLKWDLSRVFKNNQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KAEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATSFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTRADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=364714 FFA26_RS08690 WP_003649968.1 1755263..1757074(+) (pepF) [Lactobacillus paragasseri JV-V03]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACAATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTATGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATATTCACTTTTAATCCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTATGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAAGCT
CACAATTTTAATGCTCGTGTGCATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTAATTAAAGAAGTAAACAGCCACCTTGACTTACTTCACCGCTATGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTACCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGCAGAAGCAAGAAAGGCCTTAGCACCATTAGGAGAAGACTATTTAAAACACGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACCCTAGTCCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGCTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTATGTTTACCAATACGCAACAAGTTTTGCAGCTGCAACTGCAC
TTGCTAATAAAGTTGTTCACGGCACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGCTCTTCAGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAGGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.433

98.342

0.506

Multiple sequence alignment